SRR2933197.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933197.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	447706
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGCT	3172	0.7085006678489902	No Hit
TCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	2584	0.5771644784747133	No Hit
GCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1916	0.42795941979781377	No Hit
CCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTGC	1712	0.38239380307612586	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1162	0.25954532662059476	No Hit
TCCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	828	0.18494279728214497	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCC	738	0.16484031931669443	No Hit
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG	660	0.1474181717466373	No Hit
TTCCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCT	636	0.1420575109558505	No Hit
GCCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	569	0.127092332914904	No Hit
TTTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCG	562	0.1255288068509245	No Hit
TGCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	499	0.1114570722751091	No Hit
TTCTGTCTCTTATACACATCTGACGCTGCACAAGTCGTATGCCGTCTTCTG	469	0.10475624628662558	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAC	30	2.162522E-6	45.000004	26
CGTATGG	35	1.2097007E-7	45.000004	2
ACGTTAC	25	3.8869766E-5	45.000004	36
AAGCGTT	25	3.8869766E-5	45.000004	30
TAGTTCG	25	3.8869766E-5	45.000004	1
ACGCCTA	20	7.028669E-4	45.0	38
CGTTGGC	20	7.028669E-4	45.0	30
TTGCGAG	20	7.028669E-4	45.0	1
TCGTAAC	20	7.028669E-4	45.0	34
CACGTTA	20	7.028669E-4	45.0	35
CTACGGG	75	0.0	42.0	3
CGTTTGG	255	0.0	41.47059	2
TTACACG	125	0.0	41.399998	34
CGTTTTT	775	0.0	40.35484	1
TCTACGG	45	1.9237632E-8	40.0	2
TGCGGGT	120	0.0	39.375004	4
ATACTAT	210	0.0	38.57143	45
TCGTCGG	35	6.239745E-6	38.57143	2
CGAGATA	130	0.0	38.07692	19
GCCGATT	95	0.0	37.894737	9