##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933194.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2228748 Sequences flagged as poor quality 0 Sequence length 51 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.04396414489211 33.0 31.0 34.0 30.0 34.0 2 32.29803055347666 34.0 31.0 34.0 30.0 34.0 3 32.2419865323491 33.0 31.0 34.0 30.0 34.0 4 35.875749075265574 37.0 35.0 37.0 35.0 37.0 5 35.09598976645184 37.0 35.0 37.0 35.0 37.0 6 34.883956822395355 37.0 35.0 37.0 32.0 37.0 7 35.680775036029196 37.0 35.0 37.0 35.0 37.0 8 35.92780565591085 37.0 35.0 37.0 35.0 37.0 9 37.77975392462495 39.0 38.0 39.0 35.0 39.0 10 37.272307142844326 39.0 37.0 39.0 34.0 39.0 11 37.220905189819575 39.0 37.0 39.0 34.0 39.0 12 37.239899261827716 39.0 37.0 39.0 34.0 39.0 13 37.29813105833409 39.0 37.0 39.0 34.0 39.0 14 38.515677860395165 40.0 38.0 41.0 34.0 41.0 15 38.56172030216067 40.0 38.0 41.0 34.0 41.0 16 38.52070041117255 40.0 38.0 41.0 34.0 41.0 17 38.44908800815525 40.0 38.0 41.0 34.0 41.0 18 38.20514163108615 39.0 38.0 41.0 34.0 41.0 19 37.990925398474836 39.0 37.0 41.0 34.0 41.0 20 37.69314476109457 39.0 35.0 41.0 34.0 41.0 21 37.56660106929989 39.0 35.0 41.0 33.0 41.0 22 37.62234671663194 39.0 35.0 41.0 33.0 41.0 23 37.54465466710458 39.0 35.0 41.0 33.0 41.0 24 37.48324889130579 39.0 35.0 41.0 33.0 41.0 25 37.40363199428558 39.0 35.0 41.0 33.0 41.0 26 37.393256662484944 39.0 35.0 41.0 33.0 41.0 27 37.36353773508714 39.0 35.0 41.0 33.0 41.0 28 37.26988739866508 39.0 35.0 41.0 33.0 41.0 29 37.16791310637183 39.0 35.0 41.0 33.0 41.0 30 36.97209016003604 39.0 35.0 41.0 32.0 41.0 31 36.69211727840025 39.0 35.0 41.0 31.0 41.0 32 36.28919509967031 39.0 35.0 41.0 30.0 41.0 33 35.62949961144104 39.0 35.0 41.0 25.0 41.0 34 35.0230519556271 39.0 35.0 41.0 21.0 41.0 35 34.6369867746376 39.0 34.0 40.0 18.0 41.0 36 34.36999113403579 38.0 34.0 40.0 16.0 41.0 37 34.243091188416095 38.0 34.0 40.0 15.0 41.0 38 34.085410284159536 38.0 34.0 40.0 15.0 41.0 39 34.00491621304876 38.0 33.0 40.0 15.0 41.0 40 33.90220338952631 38.0 33.0 40.0 15.0 41.0 41 33.814164723871876 38.0 33.0 40.0 14.0 41.0 42 33.72848433290798 38.0 33.0 40.0 12.0 41.0 43 33.57780287407998 38.0 33.0 40.0 12.0 41.0 44 33.53639487281649 38.0 33.0 40.0 10.0 41.0 45 33.609206603887024 38.0 33.0 40.0 11.0 41.0 46 33.45320691258052 38.0 33.0 40.0 10.0 41.0 47 33.40124949074548 38.0 33.0 40.0 10.0 41.0 48 33.28497389565801 38.0 32.0 40.0 10.0 41.0 49 33.330416000373305 38.0 33.0 40.0 10.0 41.0 50 33.13464869065502 38.0 32.0 40.0 10.0 41.0 51 32.20118918783101 37.0 31.0 40.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 6.0 10 19.0 11 12.0 12 18.0 13 19.0 14 25.0 15 47.0 16 118.0 17 295.0 18 744.0 19 1631.0 20 3007.0 21 4984.0 22 8181.0 23 13629.0 24 24980.0 25 47327.0 26 68218.0 27 63769.0 28 50392.0 29 42445.0 30 42466.0 31 48423.0 32 59435.0 33 75727.0 34 111711.0 35 145120.0 36 181948.0 37 270700.0 38 448985.0 39 514226.0 40 140.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 19.974039236378452 3.6878552442896195 50.21909161556174 26.11901390377019 2 31.059904484490847 3.655146297383105 45.328812409478324 19.956136808647727 3 15.902336199516501 3.796570989631847 59.10632337078934 21.194769440062313 4 14.31220577651668 3.608348723139628 59.543968183033705 22.535477317309986 5 13.991128651601706 6.6678691354967 58.899705125927206 20.44129708697439 6 16.63023365584624 6.407498739202458 61.05647655096045 15.90579105399085 7 70.30444895519817 1.1626258329788741 23.537115905432106 4.995809306390853 8 72.4140189918286 1.669322866470323 20.973972831383357 4.942685310317721 9 66.15063703927048 4.295550685855916 23.618910706818358 5.934901568055249 10 29.69546130832198 19.06630987442277 33.7421727355448 17.49605608171045 11 21.296216530536427 23.020772200356436 36.33869778009896 19.344313489008176 12 16.280440857378224 19.74839685778742 43.363089950052675 20.60807233478168 13 17.67543930493712 20.004056088889367 45.201117398647135 17.11938720752638 14 17.030503224231722 22.34896004393498 43.51353315852667 17.107003573306628 15 15.353373284014163 23.088971925044913 44.06415619890629 17.49349859203463 16 15.641472252583064 22.620233422531395 42.371187769994634 19.367106554890906 17 16.385253065846832 23.62725619944471 40.25654762225249 19.73094311245596 18 17.578389301975818 22.20228576761482 40.692846387299056 19.5264785431103 19 17.845759143698615 25.40210916622247 38.09510990026688 18.65702178981204 20 18.58173288321515 24.696242015696704 37.91770087959698 18.80432422149117 21 18.474946472189767 25.661268120038695 38.091789650512304 17.771995757259234 22 17.66000463040236 23.366302516031425 37.78614720013209 21.187545653434125 23 16.835460985270654 24.366998871115083 36.98838989423658 21.809150249377677 24 17.008472918427746 23.354367564210936 38.54468966433172 21.092469853029595 25 17.38891072476565 24.636028837715166 37.072203766419534 20.90285667109965 26 17.157166265544603 24.809848399190937 38.106282092008605 19.926703243255854 27 18.067767194855588 23.60168130268653 37.53273138102648 20.797820121431403 28 18.135607973624655 22.74389029176919 37.82756058558437 21.292941149021782 29 18.436628995292427 22.26747932022822 37.36640481561845 21.929486868860902 30 18.760846897002263 23.744496910372998 36.97012852058645 20.524527672038293 31 18.129102078835295 25.705149258686937 34.93082214768112 21.234926514796648 32 18.709383025806417 24.817206790538904 34.661433235161624 21.811976948493054 33 20.314992991580922 25.65135223901491 32.36579460755545 21.667860161848715 34 19.31658491673352 26.49460594019602 31.71650630757717 22.47230283549329 35 20.67945770450495 26.926417881249918 30.612882210101816 21.781242204143314 36 21.902790266104557 28.002941561809592 29.423694379086374 20.670573792999477 37 21.91100115401113 28.279958075116614 29.429886196196247 20.379154574676008 38 22.528926554280698 27.464163736770598 29.468158804853665 20.538750904095036 39 23.43320106176203 26.455211625540436 29.38389625027145 20.72769106242608 40 22.919369978122244 26.692609482992246 30.352466945567645 20.03555359331786 41 21.71376037129366 25.97530093128519 30.810257597539064 21.500681099882087 42 22.790553261292885 25.68616999319798 30.847991787317362 20.675284958191774 43 21.80753499274032 24.560739931118277 32.24397733615465 21.387747739986754 44 21.273288859933917 24.772293682372347 30.664749895457 23.289667562236733 45 21.2115950300348 24.16029088977309 30.48428983447209 24.14382424572002 46 21.46016507922834 25.032933288106147 30.388675615188436 23.118226017477078 47 20.46821803093037 25.227706317627657 31.43293903124086 22.871136620201117 48 20.436855131221655 24.182500668536775 31.793096393131933 23.58754780710964 49 21.38806181766624 22.872123721479504 32.04579432039872 23.69402014045554 50 20.37175131508811 22.629790357635766 32.22513267538547 24.77332565189066 51 19.282170976709796 22.342140071466133 31.710718304626635 26.66497064719744 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 191.0 1 597.0 2 1003.0 3 27429.0 4 53855.0 5 38220.0 6 22585.0 7 23050.5 8 23516.0 9 24203.5 10 24891.0 11 25295.5 12 25700.0 13 25555.0 14 25410.0 15 25013.5 16 24617.0 17 24238.5 18 23860.0 19 23322.0 20 22784.0 21 22011.0 22 21238.0 23 21152.5 24 21067.0 25 21394.5 26 22568.5 27 23415.0 28 25449.0 29 27483.0 30 30795.5 31 34108.0 32 38883.5 33 43659.0 34 49100.5 35 54542.0 36 61543.5 37 68545.0 38 76106.5 39 83668.0 40 94082.0 41 104496.0 42 118876.0 43 133256.0 44 153898.0 45 174540.0 46 208171.0 47 241802.0 48 250831.5 49 259861.0 50 237465.5 51 215070.0 52 179292.0 53 143514.0 54 120649.5 55 97785.0 56 82643.0 57 67501.0 58 57603.5 59 47706.0 60 40994.0 61 34282.0 62 28994.5 63 23707.0 64 19233.5 65 14760.0 66 11729.5 67 8699.0 68 6998.0 69 5297.0 70 4214.5 71 3132.0 72 2617.5 73 2103.0 74 1877.5 75 1297.5 76 943.0 77 665.5 78 388.0 79 296.0 80 204.0 81 163.5 82 123.0 83 84.5 84 46.0 85 28.5 86 11.0 87 9.5 88 8.0 89 4.5 90 1.0 91 0.5 92 0.0 93 0.5 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2228748.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 45.382309931819684 #Duplication Level Percentage of deduplicated Percentage of total 1 76.19553581313633 34.57929421692819 2 8.668824582992787 7.868225679399124 3 3.870870835291279 5.270071798596917 4 2.592726488612807 4.706556682986599 5 1.913236132008296 4.341353755777819 6 1.4769105720293736 4.021536799285088 7 1.1416253219598627 3.626671593103715 8 0.9079221399833171 3.29628831605471 9 0.6797746589787432 2.776476983181332 >10 2.422704219849364 16.21964811830922 >50 0.07646437024684376 2.3841112885028957 >100 0.04590722965106259 3.9514022541710965 >500 0.004498581155996618 1.4255986938510248 >1k 0.0022992748130649214 2.3978349542089488 >5k 5.998108207995446E-4 1.709420907794051 >10k+ 9.996847013325744E-5 1.425507957849117 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 31421 1.4098049667346868 No Hit CTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGCT 7613 0.34158191056144527 Illumina Single End Adapter 1 (95% over 22bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCC 7351 0.32982643170066783 No Hit CGTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTT 6117 0.2744590236312046 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCT 5807 0.26054986925394885 No Hit TCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC 5536 0.24839057623383173 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC 5255 0.2357826008144483 Illumina Single End Adapter 1 (95% over 21bp) CGTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC 4851 0.21765583188408918 No Hit GCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTGC 4622 0.2073810049408906 Illumina Single End Adapter 1 (95% over 21bp) CGCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCTG 4406 0.1976894651167382 No Hit CGTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT 3821 0.17144154475965878 No Hit CGTTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGT 3547 0.15914764701976178 No Hit CGTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTC 3425 0.15367372174871274 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGC 3177 0.14254639824690812 No Hit CGTTTTTTTCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCG 3148 0.14124521928903583 No Hit GAATCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTC 2503 0.11230520453635853 No Hit TTCCTGTCTCTTATACACATCTGACGCTACGAAGGTCGTATGCCGTCTTCT 2350 0.1054403638275839 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 8.97364798532629E-5 0.0 0.0 0.38954605904301426 0.0 2 8.97364798532629E-5 0.0 0.0 1.2055647385886605 0.0 3 8.97364798532629E-5 0.0 0.0 1.9036248153671926 0.0 4 8.97364798532629E-5 0.0 0.0 2.863176994438133 0.0 5 8.97364798532629E-5 0.0 0.0 4.572477462683085 0.0 6 1.3460471977989435E-4 0.0 0.0 6.9092153980620505 0.0 7 1.3460471977989435E-4 0.0 0.0 8.772862611654615 0.0 8 1.3460471977989435E-4 0.0 0.0 11.05086802096962 0.0 9 1.3460471977989435E-4 0.0 0.0 12.60182847051349 0.0 10 1.3460471977989435E-4 0.0 0.0 14.395570966300362 0.0 11 1.3460471977989435E-4 0.0 0.0 16.600575749254737 0.0 12 1.3460471977989435E-4 0.0 0.0 18.407868453499454 0.0 13 1.3460471977989435E-4 0.0 0.0 19.218727285453536 0.0 14 1.3460471977989435E-4 0.0 0.0 19.575564397590036 0.0 15 1.3460471977989435E-4 0.0 0.0 19.896596654265085 0.0 16 1.3460471977989435E-4 0.0 0.0 20.487197296419335 0.0 17 1.3460471977989435E-4 0.0 0.0 21.30335058068476 0.0 18 1.3460471977989435E-4 0.0 0.0 22.258685145202598 0.0 19 1.3460471977989435E-4 0.0 0.0 22.878898825708426 0.0 20 1.3460471977989435E-4 0.0 0.0 23.5121691640329 0.0 21 1.3460471977989435E-4 0.0 0.0 24.2635775780842 0.0 22 1.3460471977989435E-4 0.0 0.0 25.055860958708656 0.0 23 1.3460471977989435E-4 0.0 0.0 25.868559388499733 0.0 24 1.3460471977989435E-4 0.0 0.0 26.50250275042311 0.0 25 1.3460471977989435E-4 0.0 0.0 27.071476900932723 0.0 26 1.3460471977989435E-4 0.0 0.0 27.58467982921353 0.0 27 1.3460471977989435E-4 0.0 0.0 28.102952868606053 0.0 28 1.3460471977989435E-4 0.0 0.0 28.644198446841006 0.0 29 1.794729597065258E-4 0.0 0.0 29.227709907086847 0.0 30 1.794729597065258E-4 0.0 0.0 29.866633643642082 0.0 31 1.794729597065258E-4 0.0 0.0 30.438838307426412 0.0 32 1.794729597065258E-4 0.0 0.0 31.011671126569716 0.0 33 1.794729597065258E-4 0.0 0.0 31.569697426537232 0.0 34 1.794729597065258E-4 0.0 0.0 32.104706319422384 0.0 35 1.794729597065258E-4 0.0 0.0 32.668475754100506 0.0 36 1.794729597065258E-4 0.0 0.0 33.2003438701908 0.0 37 2.2434119963315728E-4 0.0 0.0 33.74953112689277 0.0 38 2.2434119963315728E-4 0.0 0.0 34.29014854976875 0.0 39 2.2434119963315728E-4 0.0 0.0 34.83969475239013 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTATT 960 0.0 44.29688 1 CGTTTTT 31805 0.0 44.28549 1 CGTTTTC 790 0.0 40.44304 1 CGTTTCT 895 0.0 40.22346 1 GTTTTTT 34990 0.0 40.074306 2 AGCGTCG 40 3.4601726E-7 39.375 17 CGTTCTG 850 0.0 38.11765 1 TGGGCGA 3415 0.0 37.884335 6 TAGTGCG 30 1.14026574E-4 37.500004 1 CGTTTGG 1340 0.0 36.77239 2 TTACGGG 615 0.0 36.585365 3 TTGGGCG 2970 0.0 36.363636 5 CGTATGG 150 0.0 36.0 2 TCTTGCG 645 0.0 35.93023 1 TTTGGGC 7065 0.0 35.859875 4 TCGTTTG 865 0.0 35.63584 1 ACGGGTA 120 0.0 35.625004 5 TTGTACG 95 0.0 35.526314 1 TCTAGCG 95 0.0 35.526314 1 GGGCGAT 5355 0.0 35.462185 7 >>END_MODULE