SRR2933193.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933193.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	326714
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGCT	2752	0.8423269281389839	No Hit
CCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	2742	0.8392661471501068	No Hit
TCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	2097	0.6418457733675325	No Hit
GCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTGC	1556	0.47625752186928016	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	730	0.22343701218802992	No Hit
TCCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTG	716	0.21915191880360194	No Hit
TTCCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	561	0.17170981347600653	No Hit
GCCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTG	467	0.14293847218056158	No Hit
CGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTG	456	0.13957161309279675	No Hit
CGGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCT	393	0.12028869286287089	No Hit
TTCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTG	387	0.11845222426954462	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCC	386	0.1181461461706569	No Hit
TGCTGTCTCTTATACACATCTGACGCGTGGTTCTTCGTATGCCGTCTTCTG	347	0.10620910031403613	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGATTG	20	7.025867E-4	45.0	1
TCTAGAC	20	7.025867E-4	45.0	23
ACTAGCA	20	7.025867E-4	45.0	12
GAACGTA	20	7.025867E-4	45.0	9
TAGGCGG	25	3.884657E-5	45.0	2
CTAGGCG	25	3.884657E-5	45.0	1
TCGCGTC	20	7.025867E-4	45.0	15
TCTATTG	35	1.2083547E-7	45.0	1
TAGTAGG	25	3.884657E-5	45.0	2
TATGGGC	100	0.0	42.75	4
TCGGGCA	75	0.0	42.0	5
GTTTGCG	70	0.0	41.785713	1
TTACGGG	115	0.0	41.086956	3
CGCTTGG	105	0.0	40.714287	2
GACCCAC	50	1.0768417E-9	40.5	12
TACCCGC	45	1.9210347E-8	40.000004	28
TCTACGG	45	1.9210347E-8	40.000004	2
TCGCTTG	45	1.9210347E-8	40.000004	1
TCAGGGA	125	0.0	39.600002	4
TGTTGCG	40	3.4480945E-7	39.375	1