SRR2933191.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933191.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	351318
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3493	0.9942559162923619	No Hit
CTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGCT	1570	0.44688857388462877	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1335	0.3799976090038085	No Hit
CCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	1322	0.37629725775508227	No Hit
GCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTGC	860	0.24479246722342718	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCC	757	0.21547429963736559	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	710	0.20209610666120154	No Hit
CGCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG	564	0.16053831571396854	No Hit
TCCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCTG	501	0.14260584427783377	No Hit
TTCCTGTCTCTTATACACATCTGACGCAGCTAGGATCGTATGCCGTCTTCT	393	0.11186446467303128	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GCGTATG	20	7.0265913E-4	45.000004	1
TACCGGG	25	3.885258E-5	45.0	3
CGTTTTT	2080	0.0	43.70192	1
CGGGTAT	50	1.0768417E-9	40.5	6
CGTATGG	50	1.0768417E-9	40.5	2
TATGGGA	140	0.0	40.17857	4
GCGGGAT	90	0.0	40.000004	5
TAGGGCG	45	1.9217623E-8	40.000004	5
TTGGGAC	570	0.0	39.86842	5
GCAACGA	40	3.449095E-7	39.375004	9
CGCGCAA	40	3.449095E-7	39.375004	16
AACGACG	40	3.449095E-7	39.375004	11
TTACACG	160	0.0	39.375004	34
ACGCGCA	40	3.449095E-7	39.375004	15
TTTTGCG	315	0.0	39.285713	1
ACACGCG	155	0.0	39.193546	36
CGGGATT	100	0.0	38.25	6
CGGGATA	65	9.094947E-12	38.07692	6
GTTTTTT	2435	0.0	37.607803	2
TTTGGGA	1650	0.0	37.5	4