SRR2933189.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933189.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	833532
Sequences flagged as poor quality	0
Sequence length	51
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	3355	0.4025040430361402	Illumina Single End Adapter 1 (95% over 21bp)
TCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	2532	0.30376758180849683	Illumina Single End Adapter 1 (95% over 21bp)
CTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGCT	2523	0.3026878392191302	Illumina Single End Adapter 1 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2219	0.2662165339782996	No Hit
GCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTGC	2066	0.24786090995906573	Illumina Single End Adapter 1 (95% over 21bp)
TCCTGTCTCTTATACACATCTGACGCGATATCGCTCGTATGCCGTCTTCTG	968	0.11613231405632897	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCTACGG	30	2.164781E-6	45.000004	2
ACGTTGT	20	7.03217E-4	45.0	30
CGATTAC	20	7.03217E-4	45.0	10
CGTTAGA	20	7.03217E-4	45.0	22
CTACGGG	80	0.0	45.0	3
TGCGACG	35	1.2113924E-7	45.0	28
ACTACGT	20	7.03217E-4	45.0	34
TTGCGAC	40	6.8102963E-9	45.0	27
TATACGA	25	3.8898805E-5	45.0	24
AGGCACG	85	0.0	42.35294	10
TGTACGG	65	0.0	41.538464	2
CGATTCA	55	6.002665E-11	40.909092	20
TACGGGA	220	0.0	40.909092	4
TCGTACA	55	6.002665E-11	40.909092	34
CGTTTTT	1445	0.0	40.32872	1
TTACCGG	45	1.9272193E-8	40.0	2
ACGGGAT	155	0.0	39.19355	5
TTCGGGC	365	0.0	38.835613	4
GGACCGA	495	0.0	38.636364	8
TACGGAC	35	6.246226E-6	38.571426	19