Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933188.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1816890 |
Sequences flagged as poor quality | 0 |
Sequence length | 51 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15264 | 0.8401169030596239 | No Hit |
CTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGCT | 3143 | 0.17298790790856905 | Illumina Single End Adapter 1 (95% over 21bp) |
CCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC | 2408 | 0.13253416552460523 | No Hit |
GCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC | 2387 | 0.13137834431363485 | No Hit |
TCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTGC | 2242 | 0.12339767404741069 | No Hit |
GAATCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTC | 2238 | 0.12317751762627348 | No Hit |
CGCTGTCTCTTATACACATCTGACGCAATGGCGATCGTATGCCGTCTTCTG | 1982 | 0.10908750667349151 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CGTTTTT | 7640 | 0.0 | 42.025524 | 1 |
TCGTTTG | 630 | 0.0 | 38.214287 | 1 |
TCGTACA | 95 | 0.0 | 37.894737 | 34 |
TTTGGGA | 9135 | 0.0 | 37.487686 | 4 |
TTTGGGC | 4735 | 0.0 | 37.064415 | 4 |
ACATACG | 310 | 0.0 | 37.01613 | 17 |
CACGACC | 585 | 0.0 | 36.923077 | 27 |
TTACACG | 545 | 0.0 | 36.743122 | 34 |
TGGGCGA | 3260 | 0.0 | 36.717793 | 6 |
GCTACGA | 210 | 0.0 | 36.42857 | 10 |
TACACGC | 550 | 0.0 | 36.409092 | 35 |
CGTTATT | 260 | 0.0 | 36.346157 | 1 |
TTGGGAC | 3795 | 0.0 | 36.284584 | 5 |
TTGGGAT | 4150 | 0.0 | 36.216866 | 5 |
CGTTTGG | 1300 | 0.0 | 36.173077 | 2 |
TCTGGGA | 4520 | 0.0 | 36.13938 | 4 |
GACCGTT | 25 | 0.0021074298 | 36.0 | 9 |
CGACCAA | 600 | 0.0 | 36.0 | 29 |
CGTACAT | 100 | 0.0 | 36.0 | 35 |
CCGCATA | 25 | 0.0021074298 | 36.0 | 43 |