##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933187.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1812932 Sequences flagged as poor quality 0 Sequence length 51 %GC 44 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.08675063377998 33.0 31.0 34.0 30.0 34.0 2 32.329546281934455 34.0 31.0 34.0 30.0 34.0 3 32.28480439420784 33.0 31.0 34.0 30.0 34.0 4 35.899766235027016 37.0 35.0 37.0 35.0 37.0 5 35.11409859829271 37.0 35.0 37.0 35.0 37.0 6 34.8714513285661 37.0 35.0 37.0 32.0 37.0 7 35.657220458351446 37.0 35.0 37.0 33.0 37.0 8 35.924920515496446 37.0 35.0 37.0 35.0 37.0 9 37.78642387028305 39.0 38.0 39.0 35.0 39.0 10 37.32741934060406 39.0 37.0 39.0 34.0 39.0 11 37.27314979271147 39.0 37.0 39.0 34.0 39.0 12 37.15556071601141 39.0 37.0 39.0 34.0 39.0 13 37.12834513373916 39.0 37.0 39.0 33.0 39.0 14 38.23641482416329 40.0 38.0 41.0 33.0 41.0 15 38.31829599786423 40.0 38.0 41.0 33.0 41.0 16 38.31631633177637 40.0 38.0 41.0 33.0 41.0 17 38.26290340729823 40.0 37.0 41.0 33.0 41.0 18 38.037621377966744 39.0 37.0 41.0 33.0 41.0 19 37.824980749415865 39.0 37.0 41.0 34.0 41.0 20 37.51749431307959 39.0 35.0 41.0 33.0 41.0 21 37.39421390322417 39.0 35.0 41.0 33.0 41.0 22 37.45412017659791 39.0 35.0 41.0 33.0 41.0 23 37.38657599954107 39.0 35.0 41.0 33.0 41.0 24 37.309920614783124 39.0 35.0 41.0 33.0 41.0 25 37.210142465354465 39.0 35.0 41.0 33.0 41.0 26 37.19130943686801 39.0 35.0 41.0 33.0 41.0 27 37.17685936372683 39.0 35.0 41.0 33.0 41.0 28 37.060326586987266 39.0 35.0 41.0 33.0 41.0 29 36.957321620446876 39.0 35.0 41.0 33.0 41.0 30 36.776691569237016 39.0 35.0 40.0 32.0 41.0 31 36.5040988851209 39.0 35.0 40.0 31.0 41.0 32 36.12881398750753 39.0 35.0 40.0 30.0 41.0 33 35.59146399313377 38.0 35.0 40.0 26.0 41.0 34 35.04724611844239 38.0 35.0 40.0 23.0 41.0 35 34.67959305699276 38.0 34.0 40.0 20.0 41.0 36 34.43278181421035 38.0 34.0 40.0 18.0 41.0 37 34.34535492781858 38.0 34.0 40.0 18.0 41.0 38 34.20281896949251 38.0 34.0 40.0 18.0 41.0 39 34.156309227262796 38.0 34.0 40.0 17.0 41.0 40 34.02447747626497 38.0 33.0 40.0 16.0 41.0 41 33.83923500715967 38.0 33.0 40.0 15.0 41.0 42 33.73246652384094 38.0 33.0 40.0 15.0 41.0 43 33.614982249747925 38.0 33.0 40.0 15.0 41.0 44 33.54581969980121 38.0 33.0 40.0 15.0 41.0 45 33.5617028106956 37.0 33.0 40.0 15.0 41.0 46 33.3622695170034 37.0 33.0 40.0 14.0 41.0 47 33.26421068192298 37.0 33.0 40.0 14.0 41.0 48 33.13317598233138 37.0 32.0 40.0 13.0 41.0 49 33.18209618452319 37.0 33.0 40.0 13.0 41.0 50 32.99141059896345 37.0 32.0 40.0 12.0 41.0 51 31.975825348110135 35.0 30.0 39.0 10.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 7.0 9 20.0 10 23.0 11 22.0 12 40.0 13 25.0 14 50.0 15 70.0 16 127.0 17 291.0 18 640.0 19 1287.0 20 2334.0 21 4017.0 22 6147.0 23 10266.0 24 18551.0 25 33929.0 26 49376.0 27 49319.0 28 42564.0 29 37764.0 30 38019.0 31 43440.0 32 52890.0 33 70906.0 34 110333.0 35 133530.0 36 152917.0 37 219474.0 38 348456.0 39 385985.0 40 113.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 21.030242722837922 3.910792020881092 49.53649668051532 25.522468575765668 2 30.67357187142154 3.7852495294914537 45.56756679235625 19.973611806730755 3 17.571480893933142 3.8992637341058574 57.530177634903026 20.99907773705798 4 15.562139120496521 4.033466230393638 57.61595029488144 22.7884443542284 5 14.831609790107958 7.287807816288752 56.253130288394715 21.62745210520858 6 18.507368174868112 6.834453801907628 58.615712006848575 16.042466016375684 7 72.10275950780283 1.517321112981623 21.5652876114493 4.814631767766248 8 74.56655848095792 1.8112648461166774 19.139327895365078 4.482848777560328 9 68.7596115022516 4.086529445119838 21.645709822541605 5.5081492300869535 10 32.759860822137846 20.56811838502492 29.67187958511406 17.00014120772318 11 25.7991474583713 20.895764430215806 34.411274112873514 18.893813998539382 12 21.31657447714531 18.781289094130393 39.951029602875344 19.951106825848957 13 20.67043882506349 18.926688921592206 42.23837408132241 18.164498172021894 14 18.623478431623468 20.64694097737808 42.223646557068875 18.50593403392957 15 17.522775261289446 20.595973814792835 43.013251462272166 18.867999461645553 16 19.176284604166067 20.025847632453946 40.89077803249101 19.90708973088897 17 19.178711611908223 21.067144272372047 38.81513482028008 20.939009295439654 18 20.43485359627388 20.143281711614115 39.40026432320683 20.021600368905176 19 20.45713794008821 23.57711155189494 36.73474791111857 19.231002596898282 20 20.82505025009212 23.8982488035955 35.97586671756029 19.300834228752098 21 20.731058859350487 24.07260724616257 36.670101250350264 18.52623264413668 22 19.43790500691697 21.52033280895257 37.16278382200767 21.878978362122794 23 18.528328696277633 22.696162900759653 36.32849991064199 22.447008492320727 24 19.00391189520622 22.514688912766722 37.151476172299894 21.32992301972716 25 20.06688612700311 22.69985857163975 35.463878402499375 21.76937689885776 26 18.495122817623606 22.76400879900625 36.78190908428998 21.958959299080163 27 19.047928990166206 21.056333056066084 37.57234137849627 22.32339657527144 28 18.221698331763132 21.981629757762562 37.660430727683114 22.136241182791192 29 19.286934093501575 21.261801325146227 36.66166188251959 22.78960269883261 30 20.9518614046197 20.67501704421346 37.95939395410308 20.41372759706376 31 20.602317130482557 22.526603314410025 36.10361557962461 20.76746397548281 32 20.020993616969637 23.052491764721456 35.01251012172547 21.914004496583438 33 20.948827644942007 22.13916462393515 33.63849278406471 23.273514947058136 34 20.466680493256227 23.02562920175715 33.442898023753784 23.064792281232833 35 20.549088437955753 24.013972945482788 32.22762905613669 23.20930956042477 36 22.15797393393685 25.215452096383096 30.624535283176645 22.00203868650341 37 21.13504532988551 26.061926205726415 30.21492256742117 22.588105896966905 38 20.82940783217462 26.1739546767336 30.055401967641366 22.94123552345041 39 22.30806229908237 23.548208096056552 29.303360523174614 24.84036908168646 40 23.6330982077651 23.18785260561345 30.711025013624337 22.46802417299711 41 20.754391229235296 24.207912927787696 30.928628321415253 24.10906752156176 42 20.179466190678966 24.740255012322578 31.314963826552788 23.765314970445665 43 19.72225102761714 23.22795339262587 32.69819276178036 24.351602817976627 44 20.959032109312428 23.188073242680918 31.44756670410142 24.40532794390523 45 21.393190698823783 22.193717138866763 30.81389704633158 25.599195115977874 46 21.899442450130508 22.406411271906503 31.700085827819247 23.994060450143746 47 20.24350609951173 23.75246286126562 32.48301646173161 23.521014577491048 48 19.31065257825445 23.58935690913945 32.70685276667851 24.39313774592759 49 20.968188547612378 22.17077088385003 32.130107472315565 24.73093309622203 50 20.563815962209283 21.47421966185163 32.38196468483098 25.579999691108107 51 20.028826232864773 21.59446686362202 31.8502845114985 26.5264223920147 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 270.0 1 974.5 2 1679.0 3 29138.5 4 56598.0 5 38243.5 6 19889.0 7 19751.0 8 19613.0 9 19972.0 10 20331.0 11 20297.5 12 20264.0 13 19917.0 14 19570.0 15 18667.5 16 17765.0 17 17015.5 18 16266.0 19 15690.0 20 15114.0 21 14699.5 22 14285.0 23 14106.5 24 13928.0 25 13970.5 26 15023.5 27 16034.0 28 16944.0 29 17854.0 30 20230.5 31 22607.0 32 25361.0 33 28115.0 34 32373.5 35 36632.0 36 39556.5 37 42481.0 38 47597.0 39 52713.0 40 58222.0 41 63731.0 42 73385.0 43 83039.0 44 97156.5 45 111274.0 46 136530.0 47 161786.0 48 177362.5 49 192939.0 50 183685.0 51 174431.0 52 150653.5 53 126876.0 54 111421.5 55 95967.0 56 86865.5 57 77764.0 58 70134.5 59 62505.0 60 57650.0 61 52795.0 62 47842.5 63 42890.0 64 38334.5 65 33779.0 66 28966.0 67 24153.0 68 20024.0 69 15895.0 70 12986.5 71 10078.0 72 8533.5 73 6989.0 74 5890.0 75 3706.0 76 2621.0 77 1985.0 78 1349.0 79 979.5 80 610.0 81 464.0 82 318.0 83 243.5 84 169.0 85 138.0 86 107.0 87 69.0 88 31.0 89 21.5 90 12.0 91 7.5 92 3.0 93 5.5 94 8.0 95 4.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1812932.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.72281035201687 #Duplication Level Percentage of deduplicated Percentage of total 1 77.77246007456945 30.89340682151926 2 8.729603499672177 6.935287685315614 3 3.305320625383396 3.938898730641434 4 1.7900724990191499 2.8442684157959435 5 1.1572388020367668 2.298438873265084 6 0.8395513335019092 2.0009603040887525 7 0.6714039493155305 1.8669036223779172 8 0.5403778248428439 1.7172260683734144 9 0.46431703966775606 1.659957993893895 >10 4.56618046237498 33.58417513698056 >50 0.10187886037828942 2.7598138316020715 >100 0.05522329567393784 4.228692346188703 >500 0.0039646342174289315 1.0512780528173067 >1k 0.0022655052671022467 2.241819090963149 >5k 0.0 0.0 >10k+ 1.4159407919389042E-4 1.9788730261768392 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 35183 1.9406684861870163 No Hit CTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGCT 4076 0.22482917175051242 Illumina Single End Adapter 2 (95% over 21bp) CGTTTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTT 4054 0.2236156678794351 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCT 3727 0.20557858761387632 No Hit CCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 3234 0.17838506904837026 TruSeq Adapter, Index 21 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 3140 0.17320009796285796 TruSeq Adapter, Index 21 (95% over 23bp) CGTTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTC 3140 0.17320009796285796 No Hit GCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTGC 3128 0.17253818676045213 TruSeq Adapter, Index 21 (95% over 23bp) CGCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCTG 2661 0.14677880913349203 No Hit CGTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCCGTCTTCT 2299 0.12681115452758293 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTACGGACTCGTATGCC 2265 0.12493573945409978 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.5159266867152215E-5 0.0 0.0 0.24143211107752524 0.0 2 5.5159266867152215E-5 0.0 0.0 0.8273338437404161 0.0 3 5.5159266867152215E-5 0.0 0.0 1.3370054695929026 0.0 4 5.5159266867152215E-5 0.0 0.0 1.9953864789192315 0.0 5 5.5159266867152215E-5 0.0 0.0 3.230623101142238 0.0 6 5.5159266867152215E-5 0.0 0.0 5.015411499162682 0.0 7 5.5159266867152215E-5 0.0 0.0 6.443209122018917 0.0 8 5.5159266867152215E-5 0.0 0.0 8.29038265086611 0.0 9 5.5159266867152215E-5 0.0 0.0 9.618121363625331 0.0 10 5.5159266867152215E-5 0.0 0.0 11.180452438370551 0.0 11 5.5159266867152215E-5 0.0 0.0 13.080303067075874 0.0 12 1.1031853373430443E-4 0.0 0.0 14.625424450558542 0.0 13 1.1031853373430443E-4 0.0 0.0 15.28888011243665 0.0 14 1.1031853373430443E-4 0.0 0.0 15.596282706687289 0.0 15 1.1031853373430443E-4 0.0 0.0 15.871196492753176 0.0 16 1.1031853373430443E-4 0.0 0.0 16.357535748720856 0.0 17 1.1031853373430443E-4 0.0 0.0 17.046750788225925 0.0 18 1.1031853373430443E-4 0.0 0.0 17.842588690585195 0.0 19 1.1031853373430443E-4 0.0 0.0 18.354521846379235 0.0 20 1.1031853373430443E-4 0.0 0.0 18.894144954140586 0.0 21 1.1031853373430443E-4 0.0 0.0 19.603603444585897 0.0 22 1.1031853373430443E-4 0.0 0.0 20.333912137906992 0.0 23 1.6547780060145666E-4 0.0 0.0 21.080161859352696 0.0 24 1.6547780060145666E-4 0.0 0.0 21.66192664700055 0.0 25 1.6547780060145666E-4 0.0 0.0 22.172039546987975 0.0 26 1.6547780060145666E-4 0.0 0.0 22.630854328788946 0.0 27 1.6547780060145666E-4 0.0 0.0 23.10958160592896 0.0 28 1.6547780060145666E-4 0.0 0.0 23.606952715270072 0.0 29 1.6547780060145666E-4 0.0 0.0 24.158104109806654 0.0 30 1.6547780060145666E-4 0.0 0.0 24.78118318833801 0.0 31 1.6547780060145666E-4 0.0 0.0 25.305913294045226 0.0 32 1.6547780060145666E-4 0.0 0.0 25.840903023389735 0.0 33 1.6547780060145666E-4 0.0 0.0 26.36612956249876 0.0 34 1.6547780060145666E-4 0.0 0.0 26.879662337031945 0.0 35 1.6547780060145666E-4 0.0 0.0 27.434840358049833 0.0 36 1.6547780060145666E-4 0.0 0.0 27.946773513843873 0.0 37 1.6547780060145666E-4 0.0 0.0 28.457493165766834 0.0 38 1.6547780060145666E-4 0.0 0.0 29.036058715936395 0.0 39 1.6547780060145666E-4 0.0 0.0 29.785121559992323 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 23750 0.0 44.14737 1 CGTTATT 710 0.0 40.24648 1 CGAATAT 80 0.0 39.375004 14 TCGTTCA 280 0.0 39.375 16 GTTTTTT 27015 0.0 39.14492 2 ACGACCA 515 0.0 38.883495 28 CGTTTAT 290 0.0 38.793106 1 CACGACC 525 0.0 38.57143 27 TACGGGA 280 0.0 38.571426 4 TCAAGCG 530 0.0 38.207542 17 AGACACG 535 0.0 37.850468 24 CGTTCTG 465 0.0 37.741932 1 AACACGT 500 0.0 37.350002 41 CGACCAA 550 0.0 37.227272 29 TGGGCGA 3015 0.0 36.940296 6 TTTGGGC 5190 0.0 36.416183 4 GGGCGAT 4550 0.0 36.296703 7 CACGTGA 510 0.0 36.17647 43 GACACGA 560 0.0 36.160713 25 CGAGACA 560 0.0 36.160713 22 >>END_MODULE