SRR2933185.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933185.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	643950
Sequences flagged as poor quality	0
Sequence length	51
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	3947	0.6129357869399799	No Hit
CTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGCT	3314	0.5146362295209256	No Hit
TCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	2925	0.4542278127183787	No Hit
GCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTGC	2639	0.40981442658591505	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1676	0.2602686543986334	No Hit
TCCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	1110	0.17237363149312834	No Hit
GCCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	693	0.10761705101327744	No Hit
TGCTGTCTCTTATACACATCTGACGCGGTAGGAATCGTATGCCGTCTTCTG	691	0.10730646789347	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTTAGCG	40	6.8066583E-9	45.000004	1
TCCGATA	20	7.0309726E-4	45.000004	14
CCGATAT	20	7.0309726E-4	45.000004	22
CGGTTAT	20	7.0309726E-4	45.000004	16
TATATCG	20	7.0309726E-4	45.000004	15
ATTCGGT	20	7.0309726E-4	45.000004	10
GTTAGAT	25	3.8888873E-5	45.000004	39
ATATGCG	25	3.8888873E-5	45.000004	19
TATGCGT	25	3.8888873E-5	45.000004	20
GTTACGT	25	3.8888873E-5	45.000004	25
CGGATCG	20	7.0309726E-4	45.000004	34
CGAGGTT	40	6.8066583E-9	45.000004	37
CGTCGAG	20	7.0309726E-4	45.000004	12
GGCGATA	25	3.8888873E-5	45.000004	8
AAGTGCG	20	7.0309726E-4	45.000004	12
TGCGTTA	25	3.8888873E-5	45.000004	22
TAGTACA	20	7.0309726E-4	45.000004	43
CTCCGTA	35	1.2108103E-7	45.0	18
TTAGCGG	75	0.0	45.0	2
CTGTTCG	35	1.2108103E-7	45.0	1