SRR2933183.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933183.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1773399
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	8482	0.4782905595413102	No Hit
GCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCTGC	3507	0.19775583498129862	Illumina Single End Adapter 1 (95% over 22bp)
CTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCTGCT	3170	0.17875277926738428	Illumina Single End Adapter 1 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCTGC	2848	0.16059555689385185	Illumina Single End Adapter 1 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCACACGAGATCGTATGCCGTCTTCTGC	2199	0.12399916769999307	Illumina Single End Adapter 1 (95% over 22bp)
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	2186	0.1232661121383287	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	4890	0.0	41.18098	1
GTCGATA	35	6.2502077E-6	38.57143	41
TATTGCG	105	0.0	38.57143	1
TACGCGG	105	0.0	38.57143	2
TTTGGGA	8205	0.0	38.418648	4
CTTTACG	65	9.094947E-12	38.07692	1
ACACGAC	2055	0.0	37.773724	26
AGACACG	2055	0.0	37.773724	24
TACGGGA	215	0.0	37.67442	4
TTGGGAC	2945	0.0	37.512737	5
TTGTTCG	390	0.0	37.500004	1
ACGGGTA	30	1.1401719E-4	37.499996	5
ATATCGG	30	1.1401719E-4	37.499996	29
CGTTTGG	1250	0.0	37.26	2
CACGACC	2085	0.0	37.230217	27
CGAGACA	2135	0.0	37.096016	22
TTACACG	2985	0.0	37.01005	34
GACACGA	2100	0.0	36.964287	25
ATTCCCG	55	2.750312E-9	36.81818	1
AAACACG	1975	0.0	36.79747	40