##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933181.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1150772 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.11360026138974 33.0 31.0 34.0 30.0 34.0 2 32.305289840211614 34.0 31.0 34.0 30.0 34.0 3 32.38430983722232 34.0 31.0 34.0 30.0 34.0 4 35.87948698786554 37.0 35.0 37.0 35.0 37.0 5 35.09675591689753 37.0 35.0 37.0 35.0 37.0 6 34.76615437289055 37.0 35.0 37.0 32.0 37.0 7 35.59933766202167 37.0 35.0 37.0 33.0 37.0 8 35.86550072473088 37.0 35.0 37.0 35.0 37.0 9 37.75007473244048 39.0 38.0 39.0 35.0 39.0 10 37.20030900995158 39.0 37.0 39.0 34.0 39.0 11 37.10572554771927 39.0 37.0 39.0 33.0 39.0 12 36.923206334530214 39.0 37.0 39.0 33.0 39.0 13 36.880637519856236 39.0 37.0 39.0 33.0 39.0 14 37.97366463556639 40.0 37.0 41.0 33.0 41.0 15 38.053655285321504 40.0 37.0 41.0 33.0 41.0 16 38.05678709596688 40.0 37.0 41.0 33.0 41.0 17 37.98395511882458 40.0 37.0 41.0 33.0 41.0 18 37.971402675768964 40.0 37.0 41.0 33.0 41.0 19 37.98517603834643 40.0 37.0 41.0 33.0 41.0 20 37.8811432673023 40.0 36.0 41.0 33.0 41.0 21 37.76558779671386 40.0 36.0 41.0 33.0 41.0 22 37.82439962042872 40.0 36.0 41.0 33.0 41.0 23 37.75116964959175 39.0 36.0 41.0 33.0 41.0 24 37.70698365966499 39.0 36.0 41.0 33.0 41.0 25 37.61056316976777 39.0 36.0 41.0 33.0 41.0 26 37.59477029333352 39.0 36.0 41.0 33.0 41.0 27 37.54276607355758 39.0 36.0 41.0 33.0 41.0 28 37.468353418400866 39.0 36.0 41.0 33.0 41.0 29 37.40192149270229 39.0 35.0 41.0 32.0 41.0 30 37.27944371256861 39.0 35.0 41.0 32.0 41.0 31 37.210529105678624 39.0 35.0 41.0 32.0 41.0 32 37.196070985390676 39.0 35.0 41.0 32.0 41.0 33 37.108989443608294 39.0 35.0 41.0 32.0 41.0 34 36.99258584671855 39.0 35.0 41.0 31.0 41.0 35 36.877049493731164 39.0 35.0 41.0 31.0 41.0 36 36.73092758600313 39.0 35.0 41.0 31.0 41.0 37 36.673096842815085 39.0 35.0 41.0 31.0 41.0 38 36.59491975821449 39.0 35.0 40.0 31.0 41.0 39 36.552541250569185 39.0 35.0 40.0 31.0 41.0 40 36.47996214714991 39.0 35.0 40.0 30.0 41.0 41 36.35773984768486 39.0 35.0 40.0 30.0 41.0 42 36.29870904053974 38.0 35.0 40.0 30.0 41.0 43 36.13959672289559 38.0 35.0 40.0 30.0 41.0 44 36.06306896587682 38.0 35.0 40.0 30.0 41.0 45 36.032550322739866 38.0 35.0 40.0 30.0 41.0 46 35.76439033970239 38.0 35.0 40.0 29.0 41.0 47 35.652428978112084 38.0 34.0 40.0 28.0 41.0 48 35.57290323365532 38.0 34.0 40.0 28.0 41.0 49 35.667151268887324 38.0 34.0 40.0 29.0 41.0 50 35.44422613688898 37.0 34.0 40.0 28.0 41.0 51 34.28231048374482 36.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 6 1.0 7 0.0 8 8.0 9 14.0 10 22.0 11 24.0 12 17.0 13 20.0 14 18.0 15 34.0 16 68.0 17 95.0 18 203.0 19 385.0 20 708.0 21 1276.0 22 1957.0 23 2961.0 24 4326.0 25 6553.0 26 8746.0 27 10804.0 28 13121.0 29 15966.0 30 20133.0 31 26160.0 32 34081.0 33 47685.0 34 77617.0 35 99471.0 36 103833.0 37 151510.0 38 242781.0 39 280070.0 40 104.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.121980722506283 4.467001282617234 54.545209650565006 16.86580834431147 2 19.844069893949452 5.598589468634969 52.56375719951476 21.993583437900817 3 20.829147737345018 5.685313858870393 51.35509032197516 22.13044808180943 4 18.59586434150292 4.64705432527034 51.850844476577464 24.906236856649276 5 18.067784061482207 8.065542088267701 49.48269509511876 24.383978755131338 6 20.982088545776225 8.29721265376634 53.2327863382147 17.48791246224274 7 82.42970805685226 2.006739823353366 10.5130295141001 5.0505226056942645 8 84.8041141077468 3.1058280875794684 7.37461460654239 4.715443198131341 9 79.35455502914566 4.784961747418255 9.467731227384748 6.392751996051346 10 38.95810812219971 28.22496550141992 16.843649306726267 15.97327706965411 11 30.284539422231337 24.980013417080013 24.919792973760224 19.815654186928427 12 24.77467300212379 22.76645590959808 31.214002426197368 21.24486866208076 13 23.599288130055303 23.110138237635258 33.19493348812797 20.09564014418147 14 21.168311359678547 25.510613744512376 31.776668184488326 21.54440671132075 15 19.56895023514649 23.12282537288012 35.35226786887411 21.955956523099278 16 21.098532115831805 23.158279833016447 31.831066449305332 23.912121601846412 17 20.552811503929536 22.807211159117532 30.3163441585301 26.323633178422835 18 22.41443135564647 22.16294800360106 31.587143239494882 23.83547740125759 19 23.263687333372726 24.70758760206192 29.177456524837243 22.85126853972811 20 26.342924575849953 24.935608443722995 28.024317588540566 20.69714939188649 21 24.798656901627776 26.451634207297364 28.20680378041871 20.54290511065615 22 23.419843374708456 23.427490415130016 28.193160765121156 24.95950544504037 23 21.776424869565822 25.526168519915327 27.44340321106179 25.25400339945706 24 22.508368295370413 24.125717344530454 29.500978473581213 23.86493588651792 25 21.746879486118882 25.794336323789597 27.421939358969453 25.036844831122064 26 21.74913883897071 25.088288557594378 27.99503289965345 25.16753970378146 27 20.98956178982457 24.472788701845367 29.459180445822458 25.0784690625076 28 19.752566103450555 24.525622799303424 31.89119999443852 23.830611102807506 29 21.63330355622139 23.431053240780972 29.306413433764465 25.629229769233174 30 22.084478941093458 24.19184686453963 30.60927794558783 23.11439624877908 31 23.44904116540896 26.42938827152555 27.214947878467672 22.906622684597817 32 23.755444171391034 26.769855366658206 25.91990420343908 23.554796258511676 33 22.66600160587849 24.334794381510847 26.69303736969617 26.306166642914498 34 21.443517916668114 24.859833225000262 28.473841907867065 25.22280695046456 35 22.321884786908267 24.76711285988884 28.105306698459813 24.805695654743076 36 23.170966968261304 25.138602607640788 27.691410635642853 23.999019788455055 37 20.903011195962364 26.856058367773983 29.871859934026894 22.36907050223676 38 20.855825480633868 28.09114229404261 27.315749774933696 23.737282450389827 39 21.367221308825727 26.252724258150177 26.753257813015956 25.626796620008136 40 22.950245574275353 24.77588957673631 27.185663189580563 25.088201659407773 41 21.575950753059686 25.03380339459076 26.362911158769936 27.027334693579615 42 22.554163639713167 23.329034769702425 27.53690565985269 26.579895930731716 43 21.71272849878169 23.004730737278976 28.724108685299953 26.55843207863938 44 21.143284681935256 23.613278738099293 29.1167146923978 26.12672188756765 45 22.08108991181572 23.73519689391122 27.286204391486756 26.8975088027863 46 22.92765204575711 24.20896580730153 28.596542147358466 24.26683999958289 47 20.29750463167335 24.956811601255506 30.09675244097006 24.648931326101085 48 20.24493122877512 24.60061593434668 29.953978720372064 25.20047411650614 49 22.096644687218667 22.225862290705717 31.02134914648601 24.656143875589603 50 21.39728808139232 22.750640439635305 28.799623209462865 27.05244826950951 51 20.357638176806525 22.53348187130031 27.538296030838428 29.570583921054734 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 219.0 1 663.5 2 1108.0 3 3088.0 4 5068.0 5 3480.5 6 1893.0 7 1920.5 8 1948.0 9 2024.5 10 2101.0 11 2100.0 12 2099.0 13 2236.5 14 2374.0 15 2293.5 16 2213.0 17 2358.0 18 2503.0 19 2550.0 20 2597.0 21 2893.5 22 3190.0 23 3647.5 24 4105.0 25 5186.5 26 7148.5 27 8029.0 28 9314.5 29 10600.0 30 12162.0 31 13724.0 32 17038.0 33 20352.0 34 23619.0 35 26886.0 36 29449.0 37 32012.0 38 34842.0 39 37672.0 40 43988.0 41 50304.0 42 57300.5 43 64297.0 44 72798.0 45 81299.0 46 97461.5 47 113624.0 48 122012.5 49 130401.0 50 125715.0 51 121029.0 52 105090.5 53 89152.0 54 79073.0 55 68994.0 56 63141.5 57 57289.0 58 52702.5 59 48116.0 60 43551.0 61 38986.0 62 34965.0 63 30944.0 64 26621.0 65 22298.0 66 19099.5 67 15901.0 68 13592.0 69 11283.0 70 9179.5 71 7076.0 72 5998.0 73 4920.0 74 4367.5 75 2957.0 76 2099.0 77 1612.5 78 1126.0 79 819.0 80 512.0 81 356.5 82 201.0 83 139.0 84 77.0 85 48.5 86 20.0 87 18.5 88 17.0 89 20.5 90 24.0 91 14.5 92 5.0 93 3.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1150772.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 34.1424773685372 #Duplication Level Percentage of deduplicated Percentage of total 1 76.0027308432701 25.94921517763374 2 10.689162650906027 7.299089877943442 3 3.8208924444554753 3.9136420143730763 4 1.760755661262458 2.404662412647089 5 1.0330371164306904 1.7635223184296889 6 0.6255593405468386 1.2814887376378494 7 0.43371862848130444 1.0365759920065154 8 0.3405040777699186 0.9300522215323261 9 0.2788750099527963 0.8569335344367542 >10 4.579619218740385 40.18768030390268 >50 0.3694187188333918 7.699123482175736 >100 0.06004318915054079 3.667601222597384 >500 0.0032121870695939188 0.7270411581931575 >1k 0.002470913130456861 2.283371546490601 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGCT 4258 0.370012478579597 Illumina PCR Primer Index 11 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC 3683 0.32004602127962795 Illumina PCR Primer Index 11 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC 3325 0.28893647047373416 Illumina PCR Primer Index 11 (95% over 24bp) TCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTGC 3189 0.2771183170949589 Illumina PCR Primer Index 11 (95% over 24bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 2724 0.2367106603219404 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGC 2636 0.2290636199003799 No Hit GAATCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTC 2562 0.2226331540913404 Illumina PCR Primer Index 11 (95% over 21bp) GAATGATACCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCG 2320 0.20160379293204908 No Hit TCCTGTCTCTTATACACATCTGACGCGTTACAGCTCGTATGCCGTCTTCTG 1354 0.11766014466810107 Illumina PCR Primer Index 11 (95% over 23bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.6069455982592553E-4 0.0 0.0 0.4006875384524476 0.0 2 2.6069455982592553E-4 0.0 0.0 1.3983656189062648 0.0 3 2.6069455982592553E-4 0.0 0.0 2.0297678428046564 0.0 4 2.6069455982592553E-4 0.0 0.0 2.799511979784006 0.0 5 2.6069455982592553E-4 0.0 0.0 4.1244486310059685 0.0 6 2.6069455982592553E-4 0.0 0.0 4.944854410778156 0.0 7 2.6069455982592553E-4 0.0 0.0 5.75717865919574 0.0 8 2.6069455982592553E-4 0.0 0.0 7.045183581109029 0.0 9 2.6069455982592553E-4 0.0 0.0 7.734286200915559 0.0 10 2.6069455982592553E-4 0.0 0.0 9.054964840993698 0.0 11 2.6069455982592553E-4 0.0 0.0 10.901725102800555 0.0 12 2.6069455982592553E-4 0.0 0.0 12.822609517784583 0.0 13 2.6069455982592553E-4 0.0 0.0 13.376411661041457 0.0 14 2.6069455982592553E-4 0.0 0.0 13.577059573920812 0.0 15 2.6069455982592553E-4 0.0 0.0 13.888502674726183 0.0 16 2.6069455982592553E-4 0.0 0.0 14.558922184411855 0.0 17 3.475927464345674E-4 0.0 0.0 15.543739333247593 0.0 18 3.475927464345674E-4 0.0 0.0 16.618843697969712 0.0 19 3.475927464345674E-4 0.0 0.0 17.39614797718401 0.0 20 3.475927464345674E-4 0.0 0.0 18.117924315155392 0.0 21 3.475927464345674E-4 0.0 0.0 19.108042253374258 0.0 22 3.475927464345674E-4 0.0 0.0 20.094075976822516 0.0 23 3.475927464345674E-4 0.0 0.0 21.132161714049353 0.0 24 3.475927464345674E-4 0.0 0.0 21.9300608634899 0.0 25 3.475927464345674E-4 0.0 0.0 22.608040515410526 0.0 26 3.475927464345674E-4 0.0 0.0 23.200251657148417 0.0 27 3.475927464345674E-4 0.0 0.0 23.79524354085779 0.0 28 3.475927464345674E-4 0.0 0.0 24.44211364197252 0.0 29 3.475927464345674E-4 0.0 0.0 25.141730942358695 0.0 30 3.475927464345674E-4 0.0 0.0 25.922163556290908 0.0 31 3.475927464345674E-4 0.0 0.0 26.565992220874335 0.0 32 3.475927464345674E-4 0.0 0.0 27.16958702505796 0.0 33 3.475927464345674E-4 0.0 0.0 27.80116304532957 0.0 34 3.475927464345674E-4 0.0 0.0 28.447772451884475 0.0 35 3.475927464345674E-4 0.0 0.0 29.136614377131178 0.0 36 3.475927464345674E-4 0.0 0.0 29.78209410726017 0.0 37 3.475927464345674E-4 0.0 0.0 30.401938872339613 0.0 38 3.475927464345674E-4 0.0 0.0 31.05019934444008 0.0 39 3.475927464345674E-4 0.0 0.0 31.718880890393578 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TATATCG 20 7.0332916E-4 45.0 9 CGTACTC 40 6.8157533E-9 45.0 45 CGTACAC 20 7.0332916E-4 45.0 19 TCGACTA 20 7.0332916E-4 45.0 33 TACGTTC 25 3.890809E-5 45.0 31 TTTACGG 205 0.0 41.70732 2 CTTACGG 65 0.0 41.538464 2 CGTTATT 60 3.6379788E-12 41.250004 1 TTACGGG 300 0.0 40.5 3 TACGGGA 175 0.0 39.857143 4 TACGGGT 40 3.4582263E-7 39.375 4 CGTTTTT 1735 0.0 39.034584 1 TAATGCG 110 0.0 38.863636 24 TCTTGCG 365 0.0 38.835617 1 TTGGGAC 2235 0.0 38.65772 5 CGCATCG 35 6.248296E-6 38.571426 21 GTATGCG 35 6.248296E-6 38.571426 1 TACGAAT 130 0.0 38.076927 12 CGGTAGT 220 0.0 37.840908 12 CGAATAT 125 0.0 37.800003 14 >>END_MODULE