##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933180.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2144679 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.19407379845655 33.0 31.0 34.0 30.0 34.0 2 32.38543437036498 34.0 31.0 34.0 30.0 34.0 3 32.450744843400805 34.0 31.0 34.0 30.0 34.0 4 35.94572241347073 37.0 35.0 37.0 35.0 37.0 5 35.12936294895413 37.0 35.0 37.0 35.0 37.0 6 34.84104660883983 37.0 35.0 37.0 32.0 37.0 7 35.62479699759265 37.0 35.0 37.0 33.0 37.0 8 35.90568052375204 37.0 35.0 37.0 35.0 37.0 9 37.76986299581429 39.0 38.0 39.0 35.0 39.0 10 37.28960044836547 39.0 37.0 39.0 34.0 39.0 11 37.200486413118234 39.0 37.0 39.0 34.0 39.0 12 36.95948904241614 39.0 37.0 39.0 33.0 39.0 13 36.863817382461434 39.0 37.0 39.0 33.0 39.0 14 37.825892825919404 40.0 37.0 41.0 33.0 41.0 15 37.95532804676131 40.0 37.0 41.0 33.0 41.0 16 38.0068523075015 40.0 37.0 41.0 33.0 41.0 17 37.98415007560572 40.0 37.0 41.0 33.0 41.0 18 37.9185132133993 40.0 37.0 41.0 33.0 41.0 19 37.88824901069111 40.0 37.0 41.0 33.0 41.0 20 37.764420689529764 40.0 36.0 41.0 33.0 41.0 21 37.64213152644289 40.0 36.0 41.0 33.0 41.0 22 37.71229167628349 39.0 35.0 41.0 33.0 41.0 23 37.64716911015588 39.0 35.0 41.0 33.0 41.0 24 37.58165441075331 39.0 35.0 41.0 33.0 41.0 25 37.465943388264634 39.0 35.0 41.0 33.0 41.0 26 37.431781632589306 39.0 35.0 41.0 33.0 41.0 27 37.374795948484596 39.0 35.0 41.0 33.0 41.0 28 37.280821978487225 39.0 35.0 41.0 32.0 41.0 29 37.20059225646355 39.0 35.0 41.0 32.0 41.0 30 37.07951492974007 39.0 35.0 41.0 32.0 41.0 31 36.942390912579455 39.0 35.0 41.0 31.0 41.0 32 36.88604215362765 39.0 35.0 41.0 31.0 41.0 33 36.73161018502069 39.0 35.0 41.0 31.0 41.0 34 36.53942431478091 39.0 35.0 41.0 30.0 41.0 35 36.379639097505965 39.0 35.0 41.0 30.0 41.0 36 36.23220631152727 39.0 35.0 41.0 30.0 41.0 37 36.17394910846798 39.0 35.0 40.0 30.0 41.0 38 36.0903501176633 38.0 35.0 40.0 30.0 41.0 39 36.052682942295796 38.0 35.0 40.0 30.0 41.0 40 35.93218472321499 38.0 35.0 40.0 29.0 41.0 41 35.78356807708753 38.0 35.0 40.0 29.0 41.0 42 35.690947689607626 38.0 35.0 40.0 29.0 41.0 43 35.52887261916585 38.0 35.0 40.0 28.0 41.0 44 35.45978489088577 38.0 34.0 40.0 28.0 41.0 45 35.472444594272616 38.0 34.0 40.0 28.0 41.0 46 35.29907599225805 37.0 34.0 40.0 27.0 41.0 47 35.21436727827334 37.0 34.0 40.0 27.0 41.0 48 35.10419041730721 37.0 34.0 40.0 27.0 41.0 49 35.15829268622484 37.0 34.0 40.0 27.0 41.0 50 34.95668256181928 37.0 34.0 40.0 27.0 41.0 51 33.89101072934458 36.0 33.0 39.0 24.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 7 1.0 8 6.0 9 26.0 10 51.0 11 42.0 12 38.0 13 37.0 14 49.0 15 93.0 16 154.0 17 323.0 18 589.0 19 1059.0 20 1918.0 21 2985.0 22 4732.0 23 7014.0 24 10738.0 25 16074.0 26 22337.0 27 26799.0 28 29395.0 29 33586.0 30 40859.0 31 51106.0 32 66537.0 33 93915.0 34 154665.0 35 173483.0 36 190741.0 37 278724.0 38 428207.0 39 508202.0 40 194.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.780155445173847 4.167197049068882 54.23995852059912 17.81268898515815 2 21.215249461574437 4.262689194979761 52.11796264149553 22.404098701950268 3 20.425294414688633 4.334494812510404 52.723507806995826 22.516702965805138 4 18.365638867168464 4.854479388290741 51.37468124600465 25.405200498536146 5 17.260298627440285 8.022878948318139 50.283655502758215 24.433166921483355 6 21.61391051994261 7.440087770710675 53.29921167689897 17.646790032447747 7 81.82366685177595 2.2867757832290985 11.089771476290858 4.799785888704091 8 84.73878841542253 2.7555638862505765 8.464483496131589 4.041164202195294 9 78.97456915463806 5.024155129975162 10.749720587556459 5.2515551278303185 10 40.8145927665632 24.642895277102074 17.839592778219956 16.702919178114765 11 32.39426506251052 22.3524359589477 25.362769906358945 19.89052907218283 12 27.44569233904002 20.41056027498754 31.63042114927222 20.513326236700223 13 25.870911217949168 20.2306265879416 33.72285549492488 20.175606699184353 14 22.080227390672448 21.877912731928646 34.75652999819553 21.285329879203367 15 20.215006534777466 20.9973147496665 36.87022626696116 21.917452448594872 16 24.44981276918364 20.347240775892335 32.79423167756107 22.408714777362952 17 24.659307989680507 20.703751004229538 30.108654954890685 24.52828605119927 18 25.322251022180943 20.230113690673523 31.918809295004053 22.52882599214148 19 25.536315691066125 22.526634521996066 29.638841057333053 22.298208729604756 20 26.044690137778193 24.795692035964358 28.235554131877077 20.924063694380372 21 26.300485993475014 23.814193172964345 29.24106591242792 20.64425492113272 22 24.127899792929387 21.98492175285905 29.959215341783086 23.92796311242848 23 22.790263717787138 23.25947146402795 29.554586024295475 24.395678793889434 24 23.140852314029278 23.398793012847143 30.00775407415282 23.452600598970754 25 23.914954172629095 23.534570907814174 27.65859133231593 24.891883587240795 26 21.927990156102613 23.56138144682724 28.323119683644965 26.187508713425178 27 21.766147754512446 22.492317032059344 30.51239835891525 25.229136854512962 28 20.57254255765082 23.363776117544862 29.766925493278944 26.29675583152537 29 21.95582648965183 23.97934609328482 28.52128453721979 25.543542879843557 30 24.805203948935947 23.112223321065763 29.062577663137468 23.019995066860822 31 24.46608560068896 24.516023143789816 27.65933736470586 23.35855389081536 32 24.834066077021316 24.019118945072897 27.07659281412277 24.07022216378302 33 25.524612307949113 23.832237831395748 26.770439772105753 23.872710088549383 34 22.586317113190365 23.80081121697 28.65072115687243 24.96215051296721 35 21.931813572101 25.45061522027306 27.996357496856174 24.62121371076977 36 24.532715618514473 26.122230879306414 26.327529667609934 23.017523834569182 37 22.66348483852362 27.5055614383318 26.710477418765233 23.120476304379352 38 23.705692087254082 25.690044990415817 28.328714926569432 22.27554799576067 39 24.35352796385846 23.468873430476076 27.232606837666616 24.944991767998847 40 25.46977892728935 21.962027883893114 28.34205025553941 24.226142933278126 41 22.40834176116799 22.605900463425996 28.043031148251092 26.94272662715493 42 22.495953939960245 23.720426226955176 28.522729974975274 25.2608898581093 43 22.716826154403527 22.96185116747075 29.42668809644707 24.894634581678655 44 23.170553728553315 22.851624881858775 28.63799197921927 25.339829410368637 45 22.622219921955686 22.400275285951885 27.78467080621389 27.19283398587854 46 22.84486396332505 23.093339376195694 28.588240944215894 25.47355571626337 47 20.98533160440327 24.697775284786207 29.728504825197614 24.588388285612904 48 20.84540390426726 24.97749080398512 29.673578190489113 24.50352710125851 49 23.3369655785318 22.933828325824052 29.358192997646732 24.371013097997416 50 22.217963620663046 22.777254777987753 28.86735031209799 26.13743128925121 51 21.468434203906504 22.581794291826423 28.259007525135466 27.69076397913161 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 392.0 1 1255.0 2 2118.0 3 12181.5 4 22245.0 5 14382.5 6 6520.0 7 6351.0 8 6182.0 9 6246.5 10 6311.0 11 6425.5 12 6540.0 13 6554.0 14 6568.0 15 6449.5 16 6331.0 17 6273.5 18 6216.0 19 6184.5 20 6153.0 21 6214.0 22 6275.0 23 7452.5 24 8630.0 25 9888.0 26 12182.0 27 13218.0 28 16843.0 29 20468.0 30 24361.0 31 28254.0 32 32164.5 33 36075.0 34 39714.0 35 43353.0 36 47805.5 37 52258.0 38 57379.5 39 62501.0 40 70103.5 41 77706.0 42 87004.0 43 96302.0 44 109360.0 45 122418.0 46 142557.5 47 162697.0 48 183797.5 49 204898.0 50 202579.5 51 200261.0 52 183209.0 53 166157.0 54 155390.0 55 144623.0 56 135889.0 57 127155.0 58 118566.5 59 109978.0 60 102422.5 61 94867.0 62 86354.0 63 77841.0 64 70475.5 65 63110.0 66 53644.5 67 44179.0 68 38068.5 69 31958.0 70 28322.0 71 24686.0 72 20183.5 73 15681.0 74 13014.0 75 8036.0 76 5725.0 77 4285.5 78 2846.0 79 2285.0 80 1724.0 81 1306.0 82 888.0 83 705.5 84 523.0 85 366.0 86 209.0 87 155.0 88 101.0 89 64.5 90 28.0 91 18.5 92 9.0 93 6.5 94 4.0 95 3.0 96 2.0 97 2.0 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 2144679.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 28.869879069941096 #Duplication Level Percentage of deduplicated Percentage of total 1 74.27715770703752 21.443725606611164 2 10.210778815300742 5.895678992152977 3 3.672115444946727 3.1804058647942486 4 1.8508543886842588 2.1373576950953725 5 1.107897939877748 1.599243977305373 6 0.7461647962664352 1.2925012460675531 7 0.5262097410075878 1.063412811181986 8 0.4303202175413287 0.9938634113415125 9 0.3653674402208097 0.9493302433741838 >10 6.235893367142896 46.30221908513644 >50 0.494454338922992 8.619411382458512 >100 0.07648159301316694 3.9649104369034793 >500 0.004479307132280565 0.8647000426116184 >1k 0.0016590026415853945 1.0262984664385597 >5k 0.0 0.0 >10k+ 1.6590026415853944E-4 0.6669407385270182 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 13925 0.6492813143598646 No Hit CTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTCTGCT 3738 0.17429181709710403 TruSeq Adapter, Index 19 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTCTGC 3552 0.16561919056418234 TruSeq Adapter, Index 13 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTCTGC 3361 0.1567134289094079 TruSeq Adapter, Index 13 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCCAATGCTGTCGTATGCCGTCTTCTGC 2591 0.12081062014408683 TruSeq Adapter, Index 13 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 2.7976214622328096E-4 0.0 0.0 0.18702099475026332 0.0 2 2.7976214622328096E-4 0.0 0.0 0.6806146747368721 0.0 3 2.7976214622328096E-4 0.0 0.0 1.041554470389275 0.0 4 2.7976214622328096E-4 0.0 0.0 1.4903395799557884 0.0 5 2.7976214622328096E-4 0.0 0.0 2.281693437572709 0.0 6 3.263891705938278E-4 0.0 0.0 3.1324501242377063 0.0 7 3.263891705938278E-4 0.0 0.0 3.877083703435339 0.0 8 3.263891705938278E-4 0.0 0.0 5.004245390568938 0.0 9 3.263891705938278E-4 0.0 0.0 5.79144944301688 0.0 10 3.263891705938278E-4 0.0 0.0 6.857156712030099 0.0 11 3.263891705938278E-4 0.0 0.0 8.374539966120803 0.0 12 3.263891705938278E-4 0.0 0.0 9.637945818465141 0.0 13 3.263891705938278E-4 0.0 0.0 10.068266626380918 0.0 14 3.263891705938278E-4 0.0 0.0 10.260696355958164 0.0 15 3.263891705938278E-4 0.0 0.0 10.475926700452609 0.0 16 3.263891705938278E-4 0.0 0.0 10.927695939578836 0.0 17 3.263891705938278E-4 0.0 0.0 11.562522876383833 0.0 18 3.263891705938278E-4 0.0 0.0 12.267896501061465 0.0 19 3.263891705938278E-4 0.0 0.0 12.752304657247075 0.0 20 3.263891705938278E-4 0.0 0.0 13.287023372728505 0.0 21 3.263891705938278E-4 0.0 0.0 13.994681721600296 0.0 22 3.263891705938278E-4 0.0 0.0 14.745749830161063 0.0 23 4.1964321933492146E-4 0.0 0.0 15.458490524689243 0.0 24 4.1964321933492146E-4 0.0 0.0 16.041747972540414 0.0 25 4.1964321933492146E-4 0.0 0.0 16.54886348959448 0.0 26 4.1964321933492146E-4 0.0 0.0 16.991260696822227 0.0 27 4.1964321933492146E-4 0.0 0.0 17.450630140920858 0.0 28 4.6627024370546826E-4 0.0 0.0 17.917786298089364 0.0 29 4.6627024370546826E-4 0.0 0.0 18.451805608205238 0.0 30 4.6627024370546826E-4 0.0 0.0 19.094559139153226 0.0 31 5.128972680760151E-4 0.0 0.0 19.601628029182923 0.0 32 5.128972680760151E-4 0.0 0.0 20.1104687461387 0.0 33 5.128972680760151E-4 0.0 0.0 20.628821376066067 0.0 34 5.128972680760151E-4 0.0 0.0 21.167969658862702 0.0 35 5.128972680760151E-4 0.0 0.0 21.79622218523145 0.0 36 5.128972680760151E-4 0.0 0.0 22.336676024710457 0.0 37 5.595242924465619E-4 0.0 0.0 22.8482677361041 0.0 38 6.061513168171088E-4 0.0 0.0 23.472090695157643 0.0 39 6.061513168171088E-4 0.0 0.0 24.415914922466254 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ATTCACG 20 7.034656E-4 45.0 11 TCTATCG 20 7.034656E-4 45.0 2 CGTTTTT 6925 0.0 41.91336 1 TGGGCGA 4215 0.0 37.41993 6 TCGTTTG 685 0.0 36.788322 1 TTTGGGA 9150 0.0 36.688522 4 TTTGGGC 6080 0.0 36.636517 4 CGTTATT 215 0.0 36.627907 1 TTGGGCG 3640 0.0 36.346153 5 GGGCGAT 6540 0.0 36.330273 7 TTGGGAC 3790 0.0 36.094986 5 CGGGTAT 220 0.0 35.795456 6 TACGAAT 165 0.0 35.454544 12 TTGGGAT 4465 0.0 35.32475 5 TTGGGCA 2765 0.0 35.153706 5 TATGGGC 695 0.0 34.64029 4 CGTTTGG 1485 0.0 34.545452 2 GGCGATT 3260 0.0 34.371166 8 GTTGGGA 2910 0.0 34.3299 4 TTATGGG 1955 0.0 34.066494 3 >>END_MODULE