##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933178.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1672504 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.221468528625344 33.0 31.0 34.0 30.0 34.0 2 32.407079444952004 34.0 31.0 34.0 30.0 34.0 3 32.47269005036759 34.0 31.0 34.0 30.0 34.0 4 35.95662910223234 37.0 35.0 37.0 35.0 37.0 5 35.185738270282165 37.0 35.0 37.0 35.0 37.0 6 34.88329355266116 37.0 35.0 37.0 32.0 37.0 7 35.67376101940563 37.0 35.0 37.0 35.0 37.0 8 35.951641371261296 37.0 35.0 37.0 35.0 37.0 9 37.81156876156948 39.0 38.0 39.0 35.0 39.0 10 37.28877419725155 39.0 37.0 39.0 34.0 39.0 11 37.21804671319172 39.0 37.0 39.0 34.0 39.0 12 37.08977855957295 39.0 37.0 39.0 33.0 39.0 13 37.08320637798176 39.0 37.0 39.0 33.0 39.0 14 38.25134947360365 40.0 38.0 41.0 33.0 41.0 15 38.32257202374404 40.0 38.0 41.0 34.0 41.0 16 38.30155443574425 40.0 37.0 41.0 34.0 41.0 17 38.237475067324205 40.0 37.0 41.0 34.0 41.0 18 38.17613709742996 40.0 37.0 41.0 34.0 41.0 19 38.180375652315334 40.0 37.0 41.0 34.0 41.0 20 38.10315789977184 40.0 37.0 41.0 34.0 41.0 21 37.98553725432047 40.0 37.0 41.0 33.0 41.0 22 38.0238116022443 40.0 37.0 41.0 34.0 41.0 23 37.945913432792985 40.0 36.0 41.0 33.0 41.0 24 37.88392374547385 40.0 36.0 41.0 33.0 41.0 25 37.7898779315326 40.0 36.0 41.0 33.0 41.0 26 37.778304267134786 40.0 36.0 41.0 33.0 41.0 27 37.75038624720778 40.0 36.0 41.0 33.0 41.0 28 37.66746208080818 40.0 36.0 41.0 33.0 41.0 29 37.59034776598442 40.0 36.0 41.0 33.0 41.0 30 37.477528902770935 39.0 36.0 41.0 33.0 41.0 31 37.407704256611645 39.0 36.0 41.0 33.0 41.0 32 37.348944456934035 39.0 35.0 41.0 32.0 41.0 33 37.23547626791924 39.0 35.0 41.0 32.0 41.0 34 37.104942050960716 39.0 35.0 41.0 32.0 41.0 35 36.95115886120452 39.0 35.0 41.0 31.0 41.0 36 36.796367602110365 39.0 35.0 41.0 31.0 41.0 37 36.78708032985272 39.0 35.0 41.0 31.0 41.0 38 36.67941481754304 39.0 35.0 41.0 31.0 41.0 39 36.61162663886006 39.0 35.0 41.0 31.0 41.0 40 36.50382241238287 39.0 35.0 41.0 30.0 41.0 41 36.37670522761081 39.0 35.0 40.0 30.0 41.0 42 36.307052180443215 39.0 35.0 40.0 30.0 41.0 43 36.232270894419386 39.0 35.0 40.0 30.0 41.0 44 36.170291371500454 38.0 35.0 40.0 30.0 41.0 45 36.14259397884848 38.0 35.0 40.0 30.0 41.0 46 35.921506914183766 38.0 35.0 40.0 29.0 41.0 47 35.832387246906436 38.0 35.0 40.0 29.0 41.0 48 35.744579983067304 38.0 35.0 40.0 29.0 41.0 49 35.77739903761067 38.0 35.0 40.0 29.0 41.0 50 35.589448515519244 38.0 34.0 40.0 28.0 41.0 51 34.467866743517504 37.0 33.0 40.0 25.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 17.0 10 31.0 11 30.0 12 22.0 13 20.0 14 34.0 15 50.0 16 97.0 17 181.0 18 290.0 19 543.0 20 1010.0 21 1632.0 22 2451.0 23 3807.0 24 5995.0 25 9089.0 26 12825.0 27 16102.0 28 18555.0 29 21974.0 30 27259.0 31 35109.0 32 45851.0 33 63471.0 34 104799.0 35 132726.0 36 149024.0 37 218962.0 38 355834.0 39 444541.0 40 170.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 23.713665258797587 4.152695598934293 54.998553067735564 17.13508607453256 2 20.524554799271034 4.271499500150672 53.42241333951967 21.781532361058627 3 20.42446535254923 4.461573783978992 52.72166763128817 22.3922932321836 4 18.586861376714197 4.5543687787891685 51.54307553225582 25.315694312240804 5 17.064533178993894 7.651820264704898 50.71790560740064 24.565740948900572 6 21.653819662015756 7.3506550656979 53.28340021907272 17.712125053213626 7 83.16129587731928 2.0524315636913273 10.021979020677978 4.764293538311418 8 85.82323270975735 2.4104576132553346 7.476334884699827 4.2899747922874925 9 79.93116907343719 5.19293227400353 9.634117466983637 5.24178118557564 10 37.49718984229634 29.518554215714882 17.26614704658404 15.718108895404734 11 29.420138905497385 24.75713062569656 26.35120753074432 19.47152293806173 12 25.503556344259863 22.386732707365724 31.22659198423442 20.883118964139996 13 23.897162577787554 22.199109837704423 32.86048942184892 21.043238162659105 14 21.165569708652416 24.651062120030804 31.826052433955315 22.357315737361468 15 20.053464745076845 23.910974203948093 34.044103930394186 21.991457120580876 16 22.229483457139715 22.884011039734435 32.016007136604756 22.870498366521097 17 21.881263064243793 22.275283048650408 30.993229313651867 24.850224573453936 18 22.459139111177016 22.469602464328933 31.373617043666265 23.69764138082779 19 23.43886770973343 24.566757388921044 29.952035989151593 22.04233891219393 20 26.031865992547704 24.619074154680646 29.04315923908104 20.30590061369061 21 25.479759689662924 25.16125521971846 28.588392015803848 20.77059307481477 22 23.56813496410173 23.816804025580808 28.34241353084955 24.272647479467913 23 22.6928605252962 24.982003032578696 28.003520469906203 24.3216159722189 24 22.149184695522404 23.966579452126872 29.907671371787455 23.976564480563276 25 21.73405863304363 24.9076235393159 28.609498093876006 24.748819733764464 26 21.34069634512085 25.26905765247796 28.900259730320528 24.489986272080667 27 21.934596270023867 23.934830649134472 29.718613527979603 24.411959552862054 28 20.3551680593888 24.617698971123538 30.608177917661184 24.418955051826483 29 22.16287674050406 23.193726293031286 30.091766596671814 24.551630369792836 30 23.743082228801846 23.162216652396648 30.002319874870253 23.092381243931257 31 23.953903847165687 24.835157344915167 27.399037610672384 23.811901197246762 32 23.590257482194364 24.74003051711685 28.46803355926204 23.201678441426747 33 23.82397889631355 23.52957003391322 29.034429813022868 23.612021256750356 34 22.51946781592152 22.919347278093205 30.34802906300971 24.21315584297556 35 22.638152135959018 23.09734386285474 30.320644973046402 23.943859028139844 36 23.074623438867707 24.807892836130733 29.57804585220723 22.539437872794323 37 23.64161759852293 25.072406403811293 28.696433610921112 22.589542386744665 38 22.13896050472824 25.402031923391515 29.409735342934905 23.04927222894534 39 23.270258247513908 23.479465519962883 30.20393374246041 23.046342490062806 40 23.609569842583337 22.94643241510932 31.502585345087365 21.941412397219974 41 20.967184532892 23.66882231671793 31.185157105752808 24.17883604463726 42 21.641443010001773 23.875398803231562 30.474605740853235 24.008552445913434 43 22.362397937463825 22.77770337171092 30.35622037376293 24.50367831706232 44 22.25794377771294 23.33088590520561 29.174818117026923 25.23635220005453 45 23.341708001894165 22.266254669645036 28.624804484772532 25.767232843688266 46 23.241140230456846 23.260930915561335 29.866894189789683 23.631034664192132 47 21.269724915456106 23.509599977040413 31.693975021883357 23.526700085620124 48 21.710501140804446 22.62888459459589 31.605963274228344 24.054650990371325 49 22.720902311743348 22.033968229672396 31.566322113429923 23.678807345154333 50 22.247659796329337 21.550202570517023 30.879686984306165 25.32245064884748 51 21.319171732922612 21.44096516361097 29.973979135475908 27.26588396799051 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 365.0 1 1082.0 2 1799.0 3 6260.5 4 10722.0 5 7296.5 6 3871.0 7 3797.0 8 3723.0 9 3840.0 10 3957.0 11 3995.5 12 4034.0 13 4010.5 14 3987.0 15 3925.5 16 3864.0 17 3745.0 18 3626.0 19 4340.5 20 5055.0 21 5222.0 22 5389.0 23 6419.0 24 7449.0 25 8495.5 26 12229.5 27 14917.0 28 17655.0 29 20393.0 30 23613.0 31 26833.0 32 29854.0 33 32875.0 34 37382.5 35 41890.0 36 44818.0 37 47746.0 38 53818.0 39 59890.0 40 67144.0 41 74398.0 42 81826.0 43 89254.0 44 99637.0 45 110020.0 46 125145.5 47 140271.0 48 154982.0 49 169693.0 50 167376.0 51 165059.0 52 145169.5 53 125280.0 54 113031.0 55 100782.0 56 92274.0 57 83766.0 58 79526.0 59 75286.0 60 69350.0 61 63414.0 62 56432.0 63 49450.0 64 43534.5 65 37619.0 66 31719.5 67 25820.0 68 21295.5 69 16771.0 70 14405.5 71 12040.0 72 10400.0 73 8760.0 74 7153.0 75 4501.0 76 3456.0 77 2661.5 78 1867.0 79 1402.0 80 937.0 81 754.0 82 571.0 83 421.5 84 272.0 85 207.5 86 143.0 87 95.5 88 48.0 89 41.0 90 34.0 91 24.5 92 15.0 93 9.5 94 4.0 95 2.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1672504.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 32.065595266361086 #Duplication Level Percentage of deduplicated Percentage of total 1 76.13802449765991 24.414110779222483 2 10.144420090000574 6.505737376358015 3 3.592263057408044 3.455641598674416 4 1.7160734282153614 2.2010766398604216 5 0.9918236159020029 1.59017073215662 6 0.6731354101907563 1.2950692573579645 7 0.47428925137280975 1.064585702159414 8 0.36364263091604476 0.9328333939638894 9 0.3117919080213086 0.8998013816943987 >10 4.980450509135616 40.99022557859131 >50 0.541766204619114 10.607268994896705 >100 0.06751043939208885 3.7543487742270862 >500 0.002959358256330159 0.6177572324626617 >1k 0.0016646390191857143 1.3184277340288948 >5k 1.8495989102063494E-4 0.35294482434574687 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 5951 0.35581379775474375 No Hit CTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGCT 4765 0.28490215867944113 TruSeq Adapter, Index 21 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 4678 0.27970037739820053 TruSeq Adapter, Index 14 (95% over 21bp) TCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 3814 0.228041308122432 TruSeq Adapter, Index 14 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTGCGTGTTTCGTATGCCGTCTTCTGC 3112 0.18606831433587004 TruSeq Adapter, Index 14 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.979058943954693E-5 0.0 0.0 0.3080411167925458 0.0 2 5.979058943954693E-5 0.0 0.0 1.0896237019463033 0.0 3 5.979058943954693E-5 0.0 0.0 1.5740470575855126 0.0 4 5.979058943954693E-5 0.0 0.0 2.115211682602852 0.0 5 5.979058943954693E-5 0.0 0.0 2.9926983732176424 0.0 6 5.979058943954693E-5 0.0 0.0 3.7713512194888623 0.0 7 5.979058943954693E-5 0.0 0.0 4.456969908592147 0.0 8 5.979058943954693E-5 0.0 0.0 5.533320099682871 0.0 9 5.979058943954693E-5 0.0 0.0 6.155620554569675 0.0 10 5.979058943954693E-5 0.0 0.0 7.139175750850222 0.0 11 5.979058943954693E-5 0.0 0.0 8.739949201915213 0.0 12 1.1958117887909386E-4 0.0 0.0 10.146403237301675 0.0 13 1.1958117887909386E-4 0.0 0.0 10.614802714971086 0.0 14 1.1958117887909386E-4 0.0 0.0 10.78442861721108 0.0 15 1.1958117887909386E-4 0.0 0.0 11.032021448080243 0.0 16 1.1958117887909386E-4 0.0 0.0 11.59339529232815 0.0 17 1.1958117887909386E-4 0.0 0.0 12.428968779745817 0.0 18 1.1958117887909386E-4 0.0 0.0 13.315065315239904 1.1958117887909386E-4 19 1.1958117887909386E-4 0.0 0.0 13.920684195673074 1.7937176831864078E-4 20 1.7937176831864078E-4 0.0 0.0 14.545974180031857 1.7937176831864078E-4 21 1.7937176831864078E-4 0.0 0.0 15.392309973548643 1.7937176831864078E-4 22 1.7937176831864078E-4 0.0 0.0 16.300349655367043 1.7937176831864078E-4 23 1.7937176831864078E-4 0.0 0.0 17.17705906831912 1.7937176831864078E-4 24 1.7937176831864078E-4 0.0 0.0 17.898073786370617 1.7937176831864078E-4 25 1.7937176831864078E-4 0.0 0.0 18.515172459976178 1.7937176831864078E-4 26 1.7937176831864078E-4 0.0 0.0 19.067398344039834 1.7937176831864078E-4 27 1.7937176831864078E-4 0.0 0.0 19.62488579997417 1.7937176831864078E-4 28 1.7937176831864078E-4 0.0 0.0 20.183868020644496 1.7937176831864078E-4 29 1.7937176831864078E-4 0.0 0.0 20.786497371605687 1.7937176831864078E-4 30 1.7937176831864078E-4 0.0 0.0 21.45812506278012 1.7937176831864078E-4 31 1.7937176831864078E-4 0.0 0.0 22.078392637625978 1.7937176831864078E-4 32 2.3916235775818772E-4 0.0 0.0 22.672591515476196 1.7937176831864078E-4 33 2.3916235775818772E-4 0.0 0.0 23.280183485360872 1.7937176831864078E-4 34 2.3916235775818772E-4 0.0 0.0 23.868164141909375 1.7937176831864078E-4 35 2.3916235775818772E-4 0.0 0.0 24.50236292409465 1.7937176831864078E-4 36 2.3916235775818772E-4 0.0 0.0 25.09381143483065 1.7937176831864078E-4 37 2.3916235775818772E-4 0.0 0.0 25.69147816686836 1.7937176831864078E-4 38 2.9895294719773464E-4 0.0 0.0 26.29608060728106 1.7937176831864078E-4 39 2.9895294719773464E-4 0.0 0.0 26.878739901369443 1.7937176831864078E-4 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CCGTACG 20 7.0342096E-4 45.0 20 TATCGCG 45 3.8562575E-10 45.0 1 GCTACGA 200 0.0 40.500004 10 TGTAGCG 40 3.4594814E-7 39.375 1 CGAATAT 195 0.0 39.23077 14 CGTTTTT 3665 0.0 38.738064 1 CTACGAA 210 0.0 38.57143 11 TTTGGGA 9470 0.0 38.276134 4 AACACGT 435 0.0 37.75862 41 TATACGG 30 1.140144E-4 37.500004 2 TGGGCGA 2990 0.0 37.474915 6 TTACGGG 385 0.0 37.4026 3 TTGGGAT 5375 0.0 37.172092 5 TACGGGA 340 0.0 37.058823 4 CACGACC 480 0.0 37.031254 27 TCAAGCG 500 0.0 36.899998 17 TAACGGG 55 2.750312E-9 36.81818 3 GCGATCG 55 2.750312E-9 36.81818 9 TACGAAT 215 0.0 36.627907 12 AAACACG 455 0.0 36.593407 40 >>END_MODULE