SRR2933173.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933173.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1341451
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3710	0.27656619585806713	No Hit
CTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGCT	3078	0.22945303257442873	No Hit
CCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	2911	0.21700382645359392	No Hit
GCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	2909	0.21685473416472165	No Hit
TCTGTCTCTTATACACATCTGACGCTATGCTCATCGTATGCCGTCTTCTGC	2847	0.21223287320968118	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	2015	0.15021048103881543	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGAC	1422	0.10600461738818638	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CCGATAA	20	7.033708E-4	45.000004	15
ATTACGC	20	7.033708E-4	45.000004	38
TATGCGT	20	7.033708E-4	45.000004	11
ACGGGTA	20	7.033708E-4	45.000004	5
TTACGCC	20	7.033708E-4	45.000004	39
CGTCGAT	40	6.8157533E-9	45.000004	40
TCGAGTA	20	7.033708E-4	45.000004	32
CACGTTA	20	7.033708E-4	45.000004	44
TATACGT	20	7.033708E-4	45.000004	26
CGATAAC	20	7.033708E-4	45.000004	16
ATACCCG	20	7.033708E-4	45.000004	19
GTTATCG	25	3.8911556E-5	45.0	45
TAATGCG	50	1.0822987E-9	40.5	24
AAACACG	385	0.0	40.324673	40
TTATCGG	45	1.9286745E-8	40.0	2
CGTTTTT	1780	0.0	39.4382	1
AACACGT	400	0.0	39.375	41
TATGGGA	510	0.0	39.264706	4
ATGGGAC	270	0.0	39.166664	5
TTACGGG	370	0.0	38.918922	3