SRR2933172.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933172.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1262657
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT	5032	0.39852469831474424	No Hit
GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	4714	0.3733397114180652	No Hit
TCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	4641	0.36755825216190935	No Hit
CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC	4350	0.344511613209288	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3066	0.24282128875854647	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGC	2154	0.17059264709259916	No Hit
GAATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTC	1941	0.1537234577561444	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCG	1842	0.14588284862793302	No Hit
TCCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTG	1728	0.1368542684196896	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
AATCCGT	25	3.8910242E-5	45.000004	38
ATGCGTA	25	3.8910242E-5	45.000004	34
CGTTAGT	20	7.033552E-4	45.0	31
GTATCGT	20	7.033552E-4	45.0	24
CGCAAAT	20	7.033552E-4	45.0	44
TAAGCGA	20	7.033552E-4	45.0	16
TTATTCG	20	7.033552E-4	45.0	1
CGATAAG	20	7.033552E-4	45.0	18
TCGTTAG	65	0.0	44.999996	1
CCCGTCA	70	0.0	41.785713	5
TCGTTTG	440	0.0	40.397728	1
CTAGCGG	80	0.0	39.375	2
AATCGTT	75	0.0	39.0	22
TATGCGT	35	6.2487798E-6	38.571426	11
TATCGAT	35	6.2487798E-6	38.571426	8
TGGGCGA	1990	0.0	38.55527	6
ACGGGAC	170	0.0	38.38235	5
CACGGGA	165	0.0	38.181816	4
TTGGGAC	2960	0.0	38.158787	5
TATGCGG	95	0.0	37.894737	2