SRR2933171.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933171.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	872075
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGCT	2598	0.2979101568099074	No Hit
CCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2428	0.2784164206060259	No Hit
GCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2111	0.24206633603761143	No Hit
TCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGCCGTCTTCTGC	2091	0.239772955307743	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1962	0.22498064960009173	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTGGTACATCGTATGC	892	0.1022847805521314	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GATAACG	30	2.1648975E-6	45.000004	17
GCGATAT	30	2.1648975E-6	45.000004	9
CTTTACG	30	2.1648975E-6	45.000004	1
TCCGCAT	25	3.8900293E-5	45.0	14
TAGACGG	20	7.032349E-4	45.0	2
CGCATAA	20	7.032349E-4	45.0	45
TTATCCG	20	7.032349E-4	45.0	1
ACGGATA	20	7.032349E-4	45.0	40
TTACGCG	20	7.032349E-4	45.0	1
CCCGCTA	20	7.032349E-4	45.0	25
GTACGTC	25	3.8900293E-5	45.0	18
ATGCGAA	65	0.0	41.538464	26
TATGGGT	85	0.0	39.705883	4
AATTCCG	40	3.4569348E-7	39.375	11
CGTTTTT	1175	0.0	39.255318	1
TTACGGG	305	0.0	39.098362	3
CGACATA	35	6.246557E-6	38.571426	8
TATGGGC	165	0.0	38.181816	4
GCGCGAC	260	0.0	38.076927	9
TTACACG	125	0.0	37.800003	34