SRR2933170.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933170.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1741064
Sequences flagged as poor quality	0
Sequence length	51
%GC	40

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	31896	1.8319832010770425	No Hit
CTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGCT	5345	0.30699618164524684	No Hit
CGCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTG	4684	0.26903089145488046	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCT	4180	0.24008307563650735	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTT	3988	0.22905533627712707	No Hit
CCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3892	0.22354146659743696	No Hit
TCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	3579	0.20556395399594732	No Hit
CGTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCT	2869	0.16478429282323911	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTC	2830	0.162544283265865	No Hit
GCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTCTTCTGC	2797	0.16064889056347154	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCC	2578	0.14807037535667844	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGT	2212	0.12704874720285986	No Hit
CGTTTTTCTGTCTCTTATACACATCTGACGCTGTCAAAGTCGTATGCCGTC	1946	0.11177073329871848	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TACGAAC	20	7.0342876E-4	45.000004	20
ACGTGCG	20	7.0342876E-4	45.000004	1
CGATCGG	30	2.166149E-6	45.000004	10
TAGTGCG	45	3.8562575E-10	45.0	1
CGTTTTT	27945	0.0	44.412235	1
CGTTATT	800	0.0	41.625004	1
TACGGGA	320	0.0	40.07813	4
GCGATGC	335	0.0	39.626865	9
GTTTTTT	31885	0.0	39.05833	2
CGTTTGG	1025	0.0	38.414635	2
GTCTTCG	195	0.0	38.076923	1
TTGTTCG	260	0.0	38.07692	1
GCCGATC	95	0.0	37.894737	9
GACCGAT	835	0.0	37.724552	9
ACTAGCG	30	1.14016315E-4	37.500004	20
TATCGCG	30	1.14016315E-4	37.500004	1
ACGACGA	30	1.14016315E-4	37.500004	22
CTAGCGG	90	0.0	37.5	2
GACACGA	230	0.0	37.173916	25
CGTTTCT	585	0.0	36.923077	1