SRR2933168.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933168.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	535114
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	2384	0.4455125449904133	TruSeq Adapter, Index 23 (95% over 24bp)
GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGC	2053	0.3836565666381369	No Hit
GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	1972	0.3685196051682445	TruSeq Adapter, Index 23 (95% over 24bp)
CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT	1959	0.3660902162903606	Illumina Single End Adapter 1 (95% over 22bp)
GAATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCG	1905	0.35599890864376565	No Hit
TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC	1867	0.3488976180776433	TruSeq Adapter, Index 23 (95% over 24bp)
GAATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC	1492	0.27881909275406735	TruSeq Adapter, Index 23 (95% over 21bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1171	0.21883187507708637	No Hit
TCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG	801	0.14968773009115816	No Hit
GTTCTGGGAGCTTTGTACATCAGCACCAAGAAGGAAGACGCTTGGGAGAGA	550	0.10278183714124466	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TCGGGTA	45	3.8380676E-10	45.000004	5
CGTTAGG	45	3.8380676E-10	45.000004	2
AATGCGA	90	0.0	45.000004	25
TGCGAAT	90	0.0	45.000004	27
ATGCGAA	90	0.0	45.000004	26
GGTACGT	110	0.0	45.0	11
ACAAACG	20	7.0299034E-4	45.0	31
AGATCAA	20	7.0299034E-4	45.0	25
CCCTCGT	20	7.0299034E-4	45.0	31
CGAGTGA	20	7.0299034E-4	45.0	20
GGTCGAC	20	7.0299034E-4	45.0	8
CGTTGAA	20	7.0299034E-4	45.0	27
TAGCGGC	20	7.0299034E-4	45.0	20
GCTATGC	20	7.0299034E-4	45.0	28
ACTCTAT	20	7.0299034E-4	45.0	24
TTCGTGA	20	7.0299034E-4	45.0	20
CGTCTCA	20	7.0299034E-4	45.0	35
ATTCGAC	35	1.210301E-7	45.0	26
GCGTTTC	20	7.0299034E-4	45.0	10
CGCGAAT	40	6.8030204E-9	45.0	16