##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933168.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 535114 Sequences flagged as poor quality 0 Sequence length 51 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.16355580306252 33.0 31.0 34.0 30.0 34.0 2 32.347843637056776 34.0 31.0 34.0 30.0 34.0 3 32.41607395807249 34.0 31.0 34.0 30.0 34.0 4 35.930741860612876 37.0 35.0 37.0 35.0 37.0 5 35.16511248070505 37.0 35.0 37.0 35.0 37.0 6 34.81525992592233 37.0 35.0 37.0 32.0 37.0 7 35.64149321452999 37.0 35.0 37.0 33.0 37.0 8 35.88985150827674 37.0 35.0 37.0 35.0 37.0 9 37.76305609645795 39.0 38.0 39.0 35.0 39.0 10 37.27950119040055 39.0 37.0 39.0 34.0 39.0 11 37.16992640820461 39.0 37.0 39.0 34.0 39.0 12 36.76940053895058 39.0 35.0 39.0 33.0 39.0 13 36.50046719016883 39.0 35.0 39.0 33.0 39.0 14 37.518341886028026 39.0 36.0 41.0 33.0 41.0 15 37.693612949763974 39.0 36.0 41.0 33.0 41.0 16 37.7814185388534 39.0 36.0 41.0 33.0 41.0 17 37.767367327335855 39.0 35.0 41.0 33.0 41.0 18 37.769357557455045 39.0 36.0 41.0 33.0 41.0 19 37.76918002519089 39.0 36.0 41.0 33.0 41.0 20 37.63800610710989 39.0 35.0 41.0 33.0 41.0 21 37.53126997237972 39.0 35.0 41.0 33.0 41.0 22 37.56843775345067 39.0 35.0 41.0 33.0 41.0 23 37.49395269045475 39.0 35.0 41.0 33.0 41.0 24 37.43856075527832 39.0 35.0 41.0 33.0 41.0 25 37.337567322103325 39.0 35.0 41.0 33.0 41.0 26 37.32155764939807 39.0 35.0 41.0 33.0 41.0 27 37.28040006428537 39.0 35.0 41.0 33.0 41.0 28 37.221537840534914 39.0 35.0 41.0 33.0 41.0 29 37.2215920345945 39.0 35.0 41.0 33.0 41.0 30 37.1836337677579 39.0 35.0 41.0 33.0 41.0 31 37.08068000463452 39.0 35.0 41.0 32.0 41.0 32 37.02617199325751 39.0 35.0 41.0 32.0 41.0 33 36.93886723202906 39.0 35.0 41.0 32.0 41.0 34 36.83848862111625 39.0 35.0 41.0 32.0 41.0 35 36.74121775920645 39.0 35.0 41.0 31.0 41.0 36 36.62881741086946 39.0 35.0 40.0 31.0 41.0 37 36.58457823940319 39.0 35.0 40.0 31.0 41.0 38 36.51021838337252 38.0 35.0 40.0 31.0 41.0 39 36.48860429740205 38.0 35.0 40.0 31.0 41.0 40 36.380879588274645 38.0 35.0 40.0 31.0 41.0 41 36.272551269449124 38.0 35.0 40.0 30.0 41.0 42 36.22895495165516 38.0 35.0 40.0 30.0 41.0 43 36.116634960027206 38.0 35.0 40.0 30.0 41.0 44 36.036149306502914 38.0 35.0 40.0 30.0 41.0 45 36.02964415059221 38.0 35.0 40.0 30.0 41.0 46 35.83799900581932 38.0 35.0 40.0 30.0 41.0 47 35.74867037677953 38.0 35.0 40.0 30.0 41.0 48 35.71164649028058 37.0 35.0 40.0 30.0 41.0 49 35.81137290371771 37.0 35.0 40.0 30.0 41.0 50 35.59705595443214 37.0 34.0 40.0 29.0 41.0 51 34.50533904924932 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 6.0 10 11.0 11 8.0 12 4.0 13 10.0 14 9.0 15 9.0 16 20.0 17 35.0 18 99.0 19 180.0 20 356.0 21 595.0 22 989.0 23 1415.0 24 2035.0 25 2970.0 26 3900.0 27 4826.0 28 5556.0 29 6968.0 30 8885.0 31 11720.0 32 16157.0 33 23284.0 34 43357.0 35 60660.0 36 45264.0 37 63595.0 38 104134.0 39 128014.0 40 40.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 25.03821615580979 4.397380745037506 53.49850686022044 17.065896238932265 2 19.28262015196762 6.146540737113961 52.985345178784335 21.585493932134085 3 19.436232279476897 6.438067402460036 52.362860997843455 21.76283932021962 4 18.200420844904077 4.589489342457869 51.77644389793576 25.433645914702286 5 18.292363870128607 7.56362195719043 50.030647675074846 24.11336649760612 6 20.86676857641549 8.350370201489776 52.64859450509611 18.13426671699862 7 82.34563102441723 1.932485414322929 11.372903717712488 4.348979843547356 8 83.72197326177225 3.6799635217916182 7.734052930777367 4.864010285658757 9 77.7912743826549 5.385955142268751 9.25447661619767 7.568293858878669 10 43.24984956476564 24.283797471193054 17.705012389883276 14.76134057415803 11 35.72005217579806 22.6510612691875 23.003883284683262 18.62500327033118 12 30.381563554681808 20.260355737282147 29.815329070067314 19.542751637968735 13 23.83903243047276 27.879666762596383 30.117694547330103 18.16360625960076 14 18.767589709856217 30.791756522909136 29.955859872849523 20.484793894385124 15 17.11205462761206 23.101058839798622 39.47345799212878 20.31342854046054 16 18.599588125147164 20.743056619710938 35.74266417996913 24.91469107517277 17 18.531565236566415 19.681974308278235 31.287164977929937 30.499295477225413 18 21.18539227155335 20.726050897565752 31.852465082206784 26.236091748674113 19 23.555541436030452 23.607679858871194 29.29020732030932 23.546571384789036 20 26.895764267053373 23.220659523017524 28.88487312983775 20.998703080091342 21 24.293328150637063 26.352702414812544 27.06283147142478 22.291137963125614 22 22.704320948433416 23.60805361100625 27.453776204696567 26.233849235863758 23 20.6694274491043 26.64815347757674 26.701973785025245 25.98044528829371 24 21.739666687845954 23.1528235105043 30.783907728072897 24.323602073576843 25 19.317005348393053 24.944217493842434 30.124235209693634 25.61454194807088 26 19.084905272521368 26.342984859301012 29.35318455506677 25.21892531311085 27 19.24468431025912 25.34282414588293 30.968541282792078 24.443950261065865 28 17.07953819186192 24.250159779037737 35.155686451858855 23.514615577241486 29 17.49122616862949 21.378061497176304 34.84248216267935 26.288230171514854 30 20.33566679249655 24.208112663843593 31.953004406537673 23.50321613712218 31 23.448087697200968 24.609148704761978 27.411355337367365 24.53140826066969 32 24.910766677754648 24.817141767922347 27.54908299913663 22.72300855518637 33 22.94520419947899 23.79081840505014 26.65731040488569 26.606666990585182 34 19.855395298945645 22.31206808268892 30.927615424003108 26.904921194362323 35 19.502199531314822 21.50812724017686 31.346217815269267 27.64345541323905 36 22.979776271971954 20.91685136251341 31.061231812286728 25.04214055322791 37 20.448166185149333 23.334093296007953 32.623328860766115 23.5944116580766 38 19.666837346808343 25.025134831082724 27.704190135186145 27.603837686922787 39 19.82437387173574 23.542086359168326 30.682247147336827 25.9512926217591 40 22.744686179019798 21.956256050112685 29.077355479393173 26.22170229147434 41 18.878407217901234 21.429452415746926 29.47035584940779 30.221784516944055 42 21.727332867389006 21.078686036993986 29.56641014811797 27.627570947499038 43 21.21828245943855 20.1512201138449 29.57444581902174 29.056051607694812 44 20.261663869754855 22.619852965910066 30.164974192415073 26.953508971920005 45 20.282220237183104 23.909484707931394 28.036082031118603 27.772213023766902 46 23.046304152012468 23.290924924408632 29.4634414349092 24.199329488669704 47 18.723113205784188 21.923178986159957 33.25422246474583 26.099485343310025 48 21.098121148017057 20.740627230833056 31.078798162634502 27.08245345851538 49 21.121293780390722 18.910736777583843 32.72199942442171 27.245970017603728 50 20.915169477905643 20.73558157700976 30.77904895031713 27.57019999476747 51 19.414741531710998 22.099029365705253 27.518995952264376 30.967233150319373 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 40.0 1 242.0 2 444.0 3 1289.5 4 2135.0 5 1498.5 6 862.0 7 828.0 8 794.0 9 888.0 10 982.0 11 1146.5 12 1311.0 13 1171.5 14 1032.0 15 1004.5 16 977.0 17 1018.0 18 1059.0 19 1081.5 20 1104.0 21 1117.0 22 1130.0 23 1512.0 24 1894.0 25 2281.0 26 2702.0 27 2736.0 28 3282.5 29 3829.0 30 4926.5 31 6024.0 32 6661.0 33 7298.0 34 8428.0 35 9558.0 36 10860.0 37 12162.0 38 14650.5 39 17139.0 40 21137.5 41 25136.0 42 30845.5 43 36555.0 44 39598.0 45 42641.0 46 50626.0 47 58611.0 48 60663.0 49 62715.0 50 60346.0 51 57977.0 52 49389.5 53 40802.0 54 34815.0 55 28828.0 56 26221.5 57 23615.0 58 22254.5 59 20894.0 60 18287.5 61 15681.0 62 14926.5 63 14172.0 64 12415.5 65 10659.0 66 8981.5 67 7304.0 68 6402.0 69 5500.0 70 4307.0 71 3114.0 72 2760.5 73 2407.0 74 1900.0 75 1065.0 76 737.0 77 692.5 78 648.0 79 526.0 80 404.0 81 254.5 82 105.0 83 61.0 84 17.0 85 12.5 86 8.0 87 7.5 88 7.0 89 5.5 90 4.0 91 2.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 535114.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 27.120458850740718 #Duplication Level Percentage of deduplicated Percentage of total 1 71.6284132378751 19.42595433761643 2 12.086407697160157 6.5557784520821585 3 5.049227793155647 4.108121237768823 4 2.5186317517890155 2.732257951382521 5 1.433142294236194 1.9433738309044424 6 0.9357506133220493 1.522679160189362 7 0.6087108321200937 1.15559619521592 8 0.4379343289840826 0.9501583958831649 9 0.343021210465728 0.8372603361030344 >10 3.210209521413147 21.362661715195806 >50 1.581923308093099 29.535961459645726 >100 0.15902201086600207 6.741390629505467 >500 0.0020742001417304616 0.35308295937246315 >1k 0.005531200377947899 2.7757233391346636 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 2384 0.4455125449904133 TruSeq Adapter, Index 23 (95% over 24bp) GAATGATACGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGC 2053 0.3836565666381369 No Hit GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1972 0.3685196051682445 TruSeq Adapter, Index 23 (95% over 24bp) CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 1959 0.3660902162903606 Illumina Single End Adapter 1 (95% over 22bp) GAATGATACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCG 1905 0.35599890864376565 No Hit TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1867 0.3488976180776433 TruSeq Adapter, Index 23 (95% over 24bp) GAATCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTC 1492 0.27881909275406735 TruSeq Adapter, Index 23 (95% over 21bp) CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1171 0.21883187507708637 No Hit TCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTG 801 0.14968773009115816 No Hit GTTCTGGGAGCTTTGTACATCAGCACCAAGAAGGAAGACGCTTGGGAGAGA 550 0.10278183714124466 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.8687606752953577E-4 0.0 0.0 0.3879547161913162 0.0 2 1.8687606752953577E-4 0.0 0.0 1.659272603594748 0.0 3 1.8687606752953577E-4 0.0 0.0 2.3224957672570703 0.0 4 1.8687606752953577E-4 0.0 0.0 3.0821469817646334 0.0 5 1.8687606752953577E-4 0.0 0.0 4.506890120609814 0.0 6 1.8687606752953577E-4 0.0 0.0 5.300926531542811 0.0 7 1.8687606752953577E-4 0.0 0.0 6.1409344550880745 0.0 8 1.8687606752953577E-4 0.0 0.0 7.471678931965899 0.0 9 1.8687606752953577E-4 0.0 0.0 8.249830877158885 0.0 10 3.7375213505907155E-4 0.0 0.0 9.870046382639961 0.0 11 3.7375213505907155E-4 0.0 0.0 11.691527412850347 0.0 12 3.7375213505907155E-4 0.0 0.0 13.87106298844732 0.0 13 3.7375213505907155E-4 0.0 0.0 14.484763994214317 0.0 14 3.7375213505907155E-4 0.0 0.0 14.674069450621737 0.0 15 3.7375213505907155E-4 0.0 0.0 15.085570551321775 0.0 16 3.7375213505907155E-4 0.0 0.0 15.820741000982968 0.0 17 3.7375213505907155E-4 0.0 0.0 16.973766337640203 0.0 18 3.7375213505907155E-4 0.0 0.0 18.36449803219501 0.0 19 3.7375213505907155E-4 0.0 0.0 19.194975276296265 0.0 20 3.7375213505907155E-4 0.0 0.0 19.969950328341252 0.0 21 3.7375213505907155E-4 0.0 0.0 20.941892755562368 0.0 22 3.7375213505907155E-4 0.0 0.0 21.848989187350732 0.0 23 3.7375213505907155E-4 0.0 0.0 22.793834584780065 0.0 24 3.7375213505907155E-4 0.0 0.0 23.46845718856169 0.0 25 3.7375213505907155E-4 0.0 0.0 24.05263177565902 0.0 26 3.7375213505907155E-4 0.0 0.0 24.638488247364112 0.0 27 3.7375213505907155E-4 0.0 0.0 25.1673475184727 0.0 28 3.7375213505907155E-4 0.0 0.0 25.69078738362293 0.0 29 3.7375213505907155E-4 0.0 0.0 26.299255859499098 0.0 30 3.7375213505907155E-4 0.0 0.0 27.00658177509839 0.0 31 3.7375213505907155E-4 0.0 0.0 27.598605157031958 0.0 32 3.7375213505907155E-4 0.0 0.0 28.176799709968343 0.0 33 3.7375213505907155E-4 0.0 0.0 28.69706268197057 0.0 34 3.7375213505907155E-4 0.0 0.0 29.243114551291875 0.0 35 3.7375213505907155E-4 0.0 0.0 29.90484270641396 0.0 36 3.7375213505907155E-4 0.0 0.0 30.47163781923104 0.0 37 3.7375213505907155E-4 0.0 0.0 30.99638581685398 0.0 38 3.7375213505907155E-4 0.0 0.0 31.473480417256884 0.0 39 5.606282025886073E-4 0.0 0.0 32.05466498727374 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGGGTA 45 3.8380676E-10 45.000004 5 CGTTAGG 45 3.8380676E-10 45.000004 2 AATGCGA 90 0.0 45.000004 25 TGCGAAT 90 0.0 45.000004 27 ATGCGAA 90 0.0 45.000004 26 GGTACGT 110 0.0 45.0 11 ACAAACG 20 7.0299034E-4 45.0 31 AGATCAA 20 7.0299034E-4 45.0 25 CCCTCGT 20 7.0299034E-4 45.0 31 CGAGTGA 20 7.0299034E-4 45.0 20 GGTCGAC 20 7.0299034E-4 45.0 8 CGTTGAA 20 7.0299034E-4 45.0 27 TAGCGGC 20 7.0299034E-4 45.0 20 GCTATGC 20 7.0299034E-4 45.0 28 ACTCTAT 20 7.0299034E-4 45.0 24 TTCGTGA 20 7.0299034E-4 45.0 20 CGTCTCA 20 7.0299034E-4 45.0 35 ATTCGAC 35 1.210301E-7 45.0 26 GCGTTTC 20 7.0299034E-4 45.0 10 CGCGAAT 40 6.8030204E-9 45.0 16 >>END_MODULE