SRR2933167.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933167.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1168267
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2639	0.22589014326348344	No Hit
CTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGCT	2544	0.21775844049348306	No Hit
TCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	2375	0.20329256925000877	No Hit
CCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	2339	0.20021108188453496	No Hit
GCTGTCTCTTATACACATCTGACGCGGGAATATTCGTATGCCGTCTTCTGC	2298	0.19670161016274532	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCGAT	20	7.033335E-4	45.0	19
TGCGCTA	20	7.033335E-4	45.0	1
GAGCGTA	35	1.2119563E-7	45.0	9
TTGACGT	20	7.033335E-4	45.0	23
TCGTCGT	20	7.033335E-4	45.0	31
CGTACTC	25	3.890845E-5	45.0	45
CGTCGTA	20	7.033335E-4	45.0	32
CGTAACG	20	7.033335E-4	45.0	16
ACCCGTT	20	7.033335E-4	45.0	34
TTCGCAC	25	3.890845E-5	45.0	40
CGCCCGA	20	7.033335E-4	45.0	27
AATCGGC	20	7.033335E-4	45.0	32
AGTCGAA	25	3.890845E-5	45.0	25
AACCCGA	70	0.0	41.785713	24
TTACGGG	360	0.0	41.250004	3
AATGCGA	50	1.0822987E-9	40.5	25
GCTACGA	90	0.0	40.000004	10
TATGGGA	650	0.0	39.461536	4
TCGTTTG	545	0.0	39.22018	1
TTGGGAC	2335	0.0	39.122055	5