SRR2933164.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933164.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1884665
Sequences flagged as poor quality	0
Sequence length	51
%GC	41

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	25532	1.3547235185032884	No Hit
CTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGCT	4113	0.21823507095425446	TruSeq Adapter, Index 15 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	3321	0.17621168748822735	TruSeq Adapter, Index 14 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	2926	0.1552530555828224	TruSeq Adapter, Index 14 (95% over 21bp)
GCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTGC	2637	0.1399187654039312	TruSeq Adapter, Index 14 (95% over 21bp)
CGTTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCT	2528	0.1341352441945916	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTT	2417	0.1282456033300348	No Hit
CGCTGTCTCTTATACACATCTGACGCATGCTGTGTCGTATGCCGTCTTCTG	2305	0.12230290263786933	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGAAACT	25	3.8917595E-5	45.0	34
CCGAAAC	20	7.034437E-4	45.0	10
CGTTTTT	27720	0.0	44.39123	1
TGTACGG	160	0.0	43.59375	2
CGTTATT	705	0.0	41.48936	1
TACGGGA	435	0.0	40.86207	4
TGTTACG	75	0.0	39.0	1
GTTTTTT	31735	0.0	38.98062	2
GTACGGG	250	0.0	38.699997	3
TCGCCCG	35	6.250415E-6	38.57143	1
GCGCTAG	35	6.250415E-6	38.57143	1
TAGCGGG	390	0.0	38.076923	3
GCGCGGC	30	1.1401992E-4	37.499996	3
GCGCGAC	30	1.1401992E-4	37.499996	9
TTTCGCG	535	0.0	37.009346	1
ACACGAC	425	0.0	36.52941	26
CGTTTAT	345	0.0	36.521736	1
CTAGCGG	185	0.0	36.48649	2
GTACGGC	105	0.0	36.42857	9
TTGGGAC	4120	0.0	36.152912	5