SRR2933158.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933158.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1624262
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	5213	0.3209457587507434	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGC	4460	0.2745862428598342	No Hit
CCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	4381	0.2697224955087295	No Hit
CTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGCT	4020	0.24749701710684605	Illumina Single End Adapter 1 (95% over 21bp)
GAATCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTC	3905	0.2404168785577696	No Hit
GCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	3898	0.23998591360260843	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCG	3591	0.22108502199768265	No Hit
TCTGTCTCTTATACACATCTGACGCTCGGGTGATCGTATGCCGTCTTCTGC	2634	0.16216595598493344	No Hit

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CTATCCG	20	7.034147E-4	45.000004	1
GTCGTAC	20	7.034147E-4	45.000004	9
CACGATA	25	3.8915197E-5	45.0	11
TAATACG	50	1.0822987E-9	40.5	4
CGTTTTT	2670	0.0	39.77528	1
CGTTCAT	260	0.0	38.942307	17
CGATACA	35	6.2498857E-6	38.571426	13
ACGACAC	35	6.2498857E-6	38.571426	22
AGGCACG	500	0.0	38.25	10
CGATCGA	30	1.1401299E-4	37.499996	41
TATTGCG	110	0.0	36.81818	1
TTTGGGC	4225	0.0	36.74556	4
TACCGGT	160	0.0	36.562504	40
TTTGGGA	6330	0.0	36.078197	4
TTGGGAC	2405	0.0	36.01871	5
TCGTTCA	275	0.0	36.0	16
TTTGTCG	375	0.0	36.0	1
GCCGATT	400	0.0	36.0	9
ATCGGTT	25	0.0021073641	36.0	10
GCTCGAC	25	0.0021073641	36.0	16