SRR2933157.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933157.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1287843
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT	4047	0.31424637941115496	No Hit
CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	3614	0.2806242686414415	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3187	0.2474680531710775	No Hit
TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	3138	0.2436632415597243	No Hit
GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC	2529	0.1963748686757625	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTATCCG	35	1.2120836E-7	45.000004	1
ACACGAA	25	3.8910686E-5	45.0	28
ACGTTAT	20	7.033604E-4	45.0	20
CACTACG	25	3.8910686E-5	45.0	30
CGTACCG	20	7.033604E-4	45.0	45
CACGTTA	20	7.033604E-4	45.0	19
AATCGGC	20	7.033604E-4	45.0	33
TGCGTAT	30	2.165707E-6	44.999996	33
CGAATAT	155	0.0	43.548386	14
TTGTGCG	255	0.0	40.588234	1
CTACGAA	175	0.0	39.857143	11
TTTGGGC	3315	0.0	39.84163	4
TCGTTTG	460	0.0	39.619568	1
CGTACAT	40	3.4586628E-7	39.375	35
ATCGTTC	35	6.2488743E-6	38.57143	11
GCGATAG	35	6.2488743E-6	38.57143	9
GCGTATG	65	9.094947E-12	38.07692	1
TTGGGCA	1335	0.0	37.58427	5
TACGAAT	180	0.0	37.5	12
CGAACGA	30	1.1399985E-4	37.499996	22