SRR2933155.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933155.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1852171
Sequences flagged as poor quality	0
Sequence length	51
%GC	42

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38024	2.0529421959419514	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTT	4054	0.2188782785174803	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCT	3926	0.21196746952630183	No Hit
CGCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTG	3786	0.20440877219220038	No Hit
CGTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTC	3240	0.1749298525892048	No Hit
CTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGCT	2805	0.1514439001582467	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCC	2629	0.14194153779537633	No Hit
CCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	2341	0.1263922175652248	No Hit
CGTTTTTTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGT	2132	0.11510816225931624	No Hit
GCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCTGC	1902	0.10269030235329243	No Hit
CGTCTGTCTCTTATACACATCTGACGCACAGCGAATCGTATGCCGTCTTCT	1893	0.10220438609610019	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	24515	0.0	44.311646	1
TTCCGCG	130	0.0	41.538464	1
GCGCGAC	50	1.0822987E-9	40.5	9
ACGGGCG	85	0.0	39.705883	5
CGTTATT	675	0.0	39.666668	1
GTTTTTT	28055	0.0	39.185528	2
TGGGCGA	2640	0.0	39.119316	6
CGAATAT	145	0.0	38.793106	14
ACTCGCG	35	6.2503586E-6	38.571426	1
AGGGCGA	305	0.0	38.360657	6
TTGGGCG	1860	0.0	38.225807	5
GCGATGT	515	0.0	38.00971	9
CACGACC	630	0.0	37.857143	27
TATTGCG	125	0.0	37.8	1
TAGGGCG	210	0.0	37.500004	5
TCTACGG	180	0.0	37.5	2
CTATGCG	60	1.5643309E-10	37.499996	1
CTACGCG	30	1.1401916E-4	37.499996	1
GCGAGAC	655	0.0	37.44275	21
ACGACCA	640	0.0	37.26563	28