##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933139.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1331365 Sequences flagged as poor quality 0 Sequence length 51 %GC 49 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.256861191333705 33.0 31.0 34.0 30.0 34.0 2 32.43998678048469 34.0 31.0 34.0 31.0 34.0 3 32.51591637154349 34.0 31.0 34.0 31.0 34.0 4 35.98094812466904 37.0 35.0 37.0 35.0 37.0 5 35.19825216976562 37.0 35.0 37.0 35.0 37.0 6 34.8891220664506 37.0 35.0 37.0 32.0 37.0 7 35.67786444739046 37.0 35.0 37.0 35.0 37.0 8 35.97010661989762 37.0 35.0 37.0 35.0 37.0 9 37.85725552346652 39.0 38.0 39.0 35.0 39.0 10 37.31833268863159 39.0 37.0 39.0 34.0 39.0 11 37.22762127590856 39.0 37.0 39.0 34.0 39.0 12 37.04273508767318 39.0 37.0 39.0 33.0 39.0 13 36.99202697982897 39.0 37.0 39.0 33.0 39.0 14 38.140591047533924 40.0 37.0 41.0 33.0 41.0 15 38.23420925140739 40.0 37.0 41.0 33.0 41.0 16 38.24737919353446 40.0 37.0 41.0 34.0 41.0 17 38.20518189977955 40.0 37.0 41.0 34.0 41.0 18 38.17837332361899 40.0 37.0 41.0 34.0 41.0 19 38.17525171534478 40.0 37.0 41.0 34.0 41.0 20 38.09541185174614 40.0 37.0 41.0 34.0 41.0 21 37.978660247189914 40.0 36.0 41.0 33.0 41.0 22 38.01624573276299 40.0 37.0 41.0 34.0 41.0 23 37.935623964878154 40.0 36.0 41.0 33.0 41.0 24 37.86706200027791 40.0 36.0 41.0 33.0 41.0 25 37.750556759416085 40.0 36.0 41.0 33.0 41.0 26 37.71441265167704 40.0 36.0 41.0 33.0 41.0 27 37.67045550994656 40.0 36.0 41.0 33.0 41.0 28 37.579189778911115 39.0 36.0 41.0 33.0 41.0 29 37.53040375854856 39.0 36.0 41.0 33.0 41.0 30 37.46251929410793 39.0 36.0 41.0 33.0 41.0 31 37.38508147652973 39.0 35.0 41.0 33.0 41.0 32 37.355472015562974 39.0 35.0 41.0 33.0 41.0 33 37.263322980550036 39.0 35.0 41.0 32.0 41.0 34 37.11833268863159 39.0 35.0 41.0 32.0 41.0 35 37.00652112681346 39.0 35.0 41.0 31.0 41.0 36 36.88344293262929 39.0 35.0 41.0 31.0 41.0 37 36.825552722206154 39.0 35.0 41.0 31.0 41.0 38 36.74075629147529 39.0 35.0 41.0 31.0 41.0 39 36.710084762630835 39.0 35.0 41.0 31.0 41.0 40 36.573661617963516 39.0 35.0 41.0 31.0 41.0 41 36.44796355619984 39.0 35.0 40.0 30.0 41.0 42 36.390230327521 39.0 35.0 40.0 30.0 41.0 43 36.26171861210111 38.0 35.0 40.0 30.0 41.0 44 36.18419742144341 38.0 35.0 40.0 30.0 41.0 45 36.18677522692875 38.0 35.0 40.0 30.0 41.0 46 35.96219293732372 38.0 35.0 40.0 30.0 41.0 47 35.86384124563887 38.0 35.0 40.0 30.0 41.0 48 35.77504065376512 38.0 35.0 40.0 29.0 41.0 49 35.818511828086216 38.0 35.0 40.0 29.0 41.0 50 35.64387076421567 37.0 34.0 40.0 29.0 41.0 51 34.51723531863914 36.0 33.0 40.0 26.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 3.0 9 28.0 10 35.0 11 35.0 12 29.0 13 28.0 14 34.0 15 34.0 16 58.0 17 145.0 18 263.0 19 449.0 20 857.0 21 1263.0 22 1990.0 23 3077.0 24 4370.0 25 6422.0 26 9280.0 27 11707.0 28 13724.0 29 16714.0 30 20831.0 31 27408.0 32 36243.0 33 51900.0 34 88043.0 35 112831.0 36 119138.0 37 175960.0 38 279559.0 39 348795.0 40 112.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 24.064024516192028 4.010395346129724 54.87465871492792 17.050921422750335 2 19.720587517322446 4.5354204143867385 54.76867725980479 20.97531480848603 3 21.0096404817612 4.5579536791188 52.25944801012494 22.172957828995056 4 18.398410653727566 4.841797703860324 51.8500185899434 24.909773052468704 5 17.377879094012535 7.963255756310253 50.38099995117793 24.277865198499285 6 21.92674435635607 7.676782850683321 52.59226433021749 17.804208462743123 7 85.57585635794842 1.9135999519290352 8.484525280445258 4.0260184096772855 8 88.20113192099838 2.2591851220364063 5.9004855918549755 3.6391973651102436 9 82.88140367217103 4.450169562817108 7.89535551858431 4.773071246427539 10 40.736311980561304 26.096975660318545 15.994336639464008 17.17237571965614 11 31.713467005667116 26.06490331351658 22.86878504392109 19.352844636895217 12 27.360566035610066 22.044818663552068 30.376343076466632 20.21827222437123 13 24.689097279859393 22.82454473416381 30.853146958197037 21.633211027779762 14 21.545181073559842 25.109117334465004 30.534827038415465 22.810874553559692 15 19.98910892204617 24.01204778554341 34.142102278488615 21.856741013921802 16 22.34939329184709 21.353948766867088 32.495145959222306 23.801511982063523 17 21.53323844325185 21.63043192512947 30.300631306966906 26.53569832465177 18 22.65486925073139 22.64795904954689 30.06365647286807 24.633515226853643 19 24.429514070146052 24.800787162047975 28.43735564627281 22.332343121533164 20 27.926751867444317 24.266448344368374 27.128323187104964 20.678476601082348 21 26.30923901409456 24.8327843979675 27.01220176285241 21.84577482508553 22 24.159190004243765 23.850859831826735 26.961501917205272 25.028448246724228 23 24.30325267676407 25.060595704408634 26.11703026593008 24.519121352897212 24 24.16144333071697 23.768913859084474 28.160872488010426 23.90877032218813 25 23.331242747105417 24.1060114994761 26.97802631134212 25.584719442076363 26 22.466641379336245 25.483469972546974 27.763235476371996 24.28665317174479 27 22.819887859452518 25.07441610677763 28.37486339208256 23.73083264168729 28 20.6907196749201 26.023517217292024 29.6889282803739 23.59683482741397 29 22.447337882549114 23.80391553030161 28.917839961242787 24.830906625906493 30 24.12366255684955 24.8109271311774 27.896181738291155 23.1692285736819 31 24.234075554036647 26.00226083756145 26.297747049081206 23.465916559320696 32 24.785013876735533 25.50412546521803 25.917836205698663 23.793024452347776 33 24.82910396472793 25.14779943892171 25.613486910050966 24.4096096862994 34 22.899204951309372 24.674751101313312 27.978878819857815 24.4471651275195 35 22.923165322807794 23.96517859490072 27.82016952526167 25.291486557029813 36 24.843750586803772 26.38104501770739 25.83866933560669 22.93653505988215 37 23.85709403506927 26.880231942404976 26.64971664419599 22.61295737832976 38 23.07421330739504 26.465169206040418 25.930004168653976 24.530613317910564 39 24.035782824394513 24.243915079636313 26.744356356070647 24.975945739898524 40 24.44228292016089 23.213468883439177 29.17697250566148 23.167275690738453 41 21.641548335730622 23.85664336977463 29.30248279021906 25.199325504275688 42 23.083602167700068 24.316246859426226 26.631539810645467 25.96861116222824 43 22.878925013050516 23.944748434876985 27.124717864747833 26.051608687324663 44 22.75762093790959 24.004611808181828 27.528138414334162 25.70962883957442 45 23.387275465405803 23.607951238015122 26.60284745355331 26.401925843025765 46 23.598111712415452 24.23415066491909 27.99164766987265 24.176089952792807 47 22.24596560672693 24.396915947167006 29.09915763145343 24.25796081465263 48 22.58726945653521 23.164121033675965 29.01323078194184 25.235378727846985 49 22.847303331543188 22.953960784608277 29.166156538590094 25.032579345258437 50 22.361561254802403 22.538071828536875 28.336857285567817 26.7635096310929 51 21.281917430606935 23.165623251324767 27.480893669279272 28.071565648789026 >>END_MODULE >>Per sequence GC content warn #GC Content Count 0 216.0 1 1054.0 2 1892.0 3 4034.5 4 6177.0 5 4306.0 6 2435.0 7 2431.5 8 2428.0 9 2389.0 10 2350.0 11 2456.5 12 2563.0 13 2630.0 14 2697.0 15 2519.5 16 2342.0 17 2414.0 18 2486.0 19 2564.0 20 2642.0 21 3259.0 22 3876.0 23 4476.0 24 5076.0 25 6177.0 26 9066.0 27 10854.0 28 12622.0 29 14390.0 30 16906.5 31 19423.0 32 22774.5 33 26126.0 34 28738.5 35 31351.0 36 34277.5 37 37204.0 38 40952.5 39 44701.0 40 50693.5 41 56686.0 42 60023.0 43 63360.0 44 69529.0 45 75698.0 46 82325.5 47 88953.0 48 98742.5 49 108532.0 50 115978.0 51 123424.0 52 120662.0 53 117900.0 54 106519.0 55 95138.0 56 86559.0 57 77980.0 58 74368.5 59 70757.0 60 66484.5 61 62212.0 62 55999.5 63 49787.0 64 41625.5 65 33464.0 66 28993.5 67 24523.0 68 21155.0 69 17787.0 70 15506.0 71 13225.0 72 11478.0 73 9731.0 74 8049.5 75 4857.5 76 3347.0 77 2705.5 78 2064.0 79 1490.0 80 916.0 81 776.0 82 636.0 83 438.0 84 240.0 85 148.0 86 56.0 87 57.5 88 59.0 89 33.5 90 8.0 91 5.5 92 3.0 93 3.5 94 4.0 95 2.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 51 1331365.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 29.971936323232008 #Duplication Level Percentage of deduplicated Percentage of total 1 75.38887426840769 22.595505390528594 2 10.463477784248461 6.272213797380953 3 3.7251151147258814 3.349467390458196 4 1.7172298473062686 2.058748145432676 5 1.0206898823436352 1.5296026079685303 6 0.6559029750970995 1.1795209322297218 7 0.48219932384480646 1.0116713200567446 8 0.3770081037459481 0.9039730303052803 9 0.2843868652472399 0.7671262514718452 >10 4.955452502689772 39.46770625839019 >50 0.8550000106308134 15.70455923052716 >100 0.07147048230772518 3.783140706679321 >500 0.0019648242490143248 0.3828559292897939 >1k 0.001228015155633953 0.993909009281061 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 3173 0.23832682998276206 No Hit CTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGCT 3054 0.22938863497237796 Illumina Single End Adapter 2 (95% over 23bp) TCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 2516 0.1889789802195491 TruSeq Adapter, Index 22 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 2411 0.18109233756332788 TruSeq Adapter, Index 22 (95% over 24bp) CCTGTCTCTTATACACATCTGACGCTGACGTGCTCGTATGCCGTCTTCTGC 2348 0.1763603519695951 TruSeq Adapter, Index 22 (95% over 24bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 5.257761770814164E-4 0.0 0.0 0.2522974541166397 0.0 2 5.257761770814164E-4 0.0 0.0 0.8864586345592681 0.0 3 5.257761770814164E-4 0.0 0.0 1.2637405970564046 0.0 4 5.257761770814164E-4 0.0 0.0 1.7236445302377634 0.0 5 5.257761770814164E-4 0.0 0.0 2.4607827305059096 0.0 6 5.257761770814164E-4 0.0 0.0 2.9856575769980433 0.0 7 5.257761770814164E-4 0.0 0.0 3.4856707214024705 0.0 8 5.257761770814164E-4 0.0 0.0 4.280268746737371 0.0 9 5.257761770814164E-4 0.0 0.0 4.715235866948583 0.0 10 5.257761770814164E-4 0.0 0.0 5.5307898284843 0.0 11 5.257761770814164E-4 0.0 0.0 6.928378018049145 0.0 12 5.257761770814164E-4 0.0 0.0 8.244470900166371 0.0 13 5.257761770814164E-4 0.0 0.0 8.616645322657574 0.0 14 5.257761770814164E-4 0.0 0.0 8.743132048686874 0.0 15 5.257761770814164E-4 0.0 0.0 8.941349667446568 0.0 16 5.257761770814164E-4 0.0 0.0 9.451502780980423 0.0 17 5.257761770814164E-4 0.0 0.0 10.186087211245601 0.0 18 5.257761770814164E-4 0.0 0.0 11.029957975461274 0.0 19 5.257761770814164E-4 0.0 0.0 11.581947850514322 0.0 20 5.257761770814164E-4 0.0 0.0 12.154292774708663 0.0 21 5.257761770814164E-4 0.0 0.0 12.979010263902085 0.0 22 5.257761770814164E-4 0.0 0.0 13.838504091665321 0.0 23 5.257761770814164E-4 0.0 0.0 14.670357114690562 0.0 24 5.257761770814164E-4 0.0 0.0 15.302565412189745 0.0 25 5.257761770814164E-4 0.0 0.0 15.877388995504614 0.0 26 5.257761770814164E-4 0.0 0.0 16.346231123696356 0.0 27 5.257761770814164E-4 0.0 0.0 16.815749249830063 0.0 28 5.257761770814164E-4 0.0 0.0 17.32770502454248 0.0 29 5.257761770814164E-4 0.0 0.0 17.88074645194969 0.0 30 5.257761770814164E-4 0.0 0.0 18.479530406762983 0.0 31 5.257761770814164E-4 0.0 0.0 19.03399894093656 0.0 32 5.257761770814164E-4 0.0 0.0 19.57727595362654 0.0 33 5.257761770814164E-4 0.0 0.0 20.125360062792698 0.0 34 5.257761770814164E-4 0.0 0.0 20.659473547824977 0.0 35 5.257761770814164E-4 0.0 0.0 21.21747229347324 0.0 36 5.257761770814164E-4 0.0 0.0 21.775621260886382 0.0 37 5.257761770814164E-4 0.0 0.0 22.311912961509428 0.0 38 5.257761770814164E-4 0.0 0.0 22.864503723621997 0.0 39 5.257761770814164E-4 0.0 0.0 23.425431793685426 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AATGCGC 20 7.033691E-4 45.0 25 GTAACGA 20 7.033691E-4 45.0 30 TACGCCC 25 3.8911407E-5 44.999996 17 CATACGT 25 3.8911407E-5 44.999996 34 TATCGTG 30 2.1657615E-6 44.999996 1 TCGTTAG 45 1.9286745E-8 40.0 1 CTTTGCG 455 0.0 39.560444 1 TCTTACG 40 3.458772E-7 39.375 1 TTTGGGC 4285 0.0 39.171528 4 TTGGGCA 2110 0.0 38.815166 5 TTGGGAC 2455 0.0 38.217922 5 CGTTAGG 130 0.0 38.07692 2 TTTGGGA 5935 0.0 37.98652 4 CGAATAT 95 0.0 37.894737 14 CGACCAA 180 0.0 37.5 29 ATTAACG 30 1.1400191E-4 37.499996 10 ATATCCG 30 1.1400191E-4 37.499996 40 ATACGAG 30 1.1400191E-4 37.499996 24 CGTTTTT 1985 0.0 37.40554 1 TAGGGCG 205 0.0 37.317074 5 >>END_MODULE