SRR2933138.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933138.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1152524
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGCT	2689	0.233314013417508	TruSeq Adapter, Index 21 (95% over 22bp)
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2648	0.22975660376703652	No Hit
CCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2643	0.22932277332185705	TruSeq Adapter, Index 15 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2461	0.21353134511732508	TruSeq Adapter, Index 15 (95% over 22bp)
TCTGTCTCTTATACACATCTGACGCGATAAGTGTCGTATGCCGTCTTCTGC	2399	0.20815184759709993	TruSeq Adapter, Index 15 (95% over 22bp)
TGTTTTGGGACAACCATCCGTAACAAGATCTGACTCCCTCTTCTGGAGTGT	1222	0.1060281608018575	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATT	30	2.1655069E-6	45.000004	12
CGTGCAA	20	7.0332934E-4	45.000004	16
ATTACGA	20	7.0332934E-4	45.000004	13
GCGATAG	35	1.211938E-7	45.000004	9
GACGCAT	35	1.211938E-7	45.000004	11
TCGAATC	25	3.8908132E-5	45.0	34
CGTAACA	300	0.0	42.75	19
CGCAATC	95	0.0	42.63158	18
TCCGTAA	315	0.0	42.142857	17
CTTTACG	60	3.6379788E-12	41.250004	1
CGATAGG	55	6.184564E-11	40.909092	2
AGACACG	665	0.0	40.601505	24
AACACGT	625	0.0	40.32	41
TTTACGG	230	0.0	40.1087	2
TACGGGA	215	0.0	39.76744	4
CCGTAAC	335	0.0	39.626865	18
GTCAAGC	695	0.0	39.496403	16
ACACGAC	685	0.0	39.416058	26
CGAACGT	40	3.4582263E-7	39.375004	18
CAACGAC	115	0.0	39.130436	10