SRR2933135.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933135.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1006403
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	3339	0.33177564057340847	No Hit
GAATGATACGGCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGC	1851	0.1839223452235337	No Hit
CCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1700	0.16891841538628163	No Hit
GAATCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTC	1688	0.167726050101202	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCG	1595	0.15848521914183483	No Hit
CTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGCT	1197	0.1189384371866936	No Hit
TCTGTCTCTTATACACATCTGACGCCGTCGCATTCGTATGCCGTCTTCTGC	1098	0.10910142358478661	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACGCATA	20	7.032866E-4	45.000004	11
TTACACG	160	0.0	42.187504	34
TTACGGG	280	0.0	40.17857	3
CGATGAA	175	0.0	39.857143	19
TCGATTG	40	3.4576442E-7	39.375004	1
TTTGGGC	2820	0.0	38.85638	4
CGAGATA	210	0.0	38.57143	19
CGTTTTT	2040	0.0	38.382355	1
TTGGGAT	2190	0.0	37.80822	5
TGGGCGA	2025	0.0	37.666668	6
TGACGTA	30	1.1398211E-4	37.499996	20
CGTAGCG	30	1.1398211E-4	37.499996	30
GGACGTA	30	1.1398211E-4	37.499996	8
TCGAACG	30	1.1398211E-4	37.499996	29
TTGGGAC	1815	0.0	36.94215	5
TTTGGGA	4280	0.0	36.799065	4
TGTTTCG	270	0.0	36.666664	1
TACGAAT	135	0.0	36.666664	12
GCTACGA	135	0.0	36.666664	10
CTTGTTG	605	0.0	36.446278	1