SRR2933133.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933133.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1372997
Sequences flagged as poor quality	0
Sequence length	51
%GC	50

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	4615	0.33612600755864724	No Hit
GCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2202	0.16037908312982477	TruSeq Adapter, Index 23 (95% over 23bp)
TCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2103	0.15316857939238032	TruSeq Adapter, Index 23 (95% over 23bp)
CTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGCT	2082	0.15163907859958908	TruSeq Adapter, Index 22 (95% over 22bp)
CCTGTCTCTTATACACATCTGACGCCGTTCTACTCGTATGCCGTCTTCTGC	2066	0.15047374466222432	TruSeq Adapter, Index 23 (95% over 23bp)
TTTCTGGGGTCTGATGAGCGTCGGCATCGGGCGCCTTAACCCGGCGTTCGG	1506	0.1096870568544578	No Hit
GCGCGCGGGAGAAACAAGCGAGATAGGAATGTCTTACACGCGGGGCAAGAC	1448	0.10546272133151056	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
GTACGAA	20	7.033766E-4	45.0	9
TTACGGG	400	0.0	40.5	3
AGACACG	1245	0.0	40.301205	24
CACGACC	1240	0.0	40.100807	27
CGATTAC	45	1.9288564E-8	40.0	10
AACACGT	1210	0.0	39.97934	41
ACGACCA	1240	0.0	39.919353	28
TCAAGCG	1325	0.0	39.73585	17
ACACGAC	1255	0.0	39.621513	26
ACACGTG	1230	0.0	39.512196	42
AAACACG	1230	0.0	39.512196	40
GCGAGAC	1330	0.0	39.248123	21
CGGGATA	155	0.0	39.193546	6
CGACCAA	1270	0.0	39.15354	29
TCTTGCG	500	0.0	39.15	1
CGAGACA	1320	0.0	39.034092	22
CGTTTTT	2610	0.0	38.96552	1
TACGGGA	295	0.0	38.898304	4
GTCAAGC	1360	0.0	38.878677	16
TATGGGA	870	0.0	38.793106	4