SRR2933129.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933129.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	997304
Sequences flagged as poor quality	0
Sequence length	51
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGCT	2775	0.27825016243793266	No Hit
TCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2685	0.26922583284535107	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2459	0.24656473853509062	No Hit
CCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2408	0.24145095176596104	No Hit
GCTGTCTCTTATACACATCTGACGCGCGTCTAATCGTATGCCGTCTTCTGC	2406	0.2412504111083481	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGGGTAC	80	0.0	45.000004	6
CGCGTTC	20	7.032836E-4	45.000004	39
ATACGAG	20	7.032836E-4	45.000004	30
ACATACG	145	0.0	45.000004	17
CGGCATA	25	3.890434E-5	45.0	6
CTACGAT	25	3.890434E-5	45.0	45
CATACGA	160	0.0	40.781254	18
ACGGGAT	150	0.0	40.5	5
CTACGCG	40	3.4576078E-7	39.375004	1
CTCACGA	35	6.2474555E-6	38.57143	24
GACACGA	205	0.0	38.414635	25
ATCGTTG	130	0.0	38.07692	23
GTTTGCG	305	0.0	37.62295	1
AACGGTC	30	1.13981376E-4	37.499996	33
TATCGTG	30	1.13981376E-4	37.499996	1
TTTGGGA	5310	0.0	37.372883	4
CGTTTTT	1715	0.0	37.259476	1
CTACGAA	145	0.0	37.241383	11
CGTTTGG	625	0.0	37.08	2
GTCAAGC	225	0.0	37.0	16