SRR2933126.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933126.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	783066
Sequences flagged as poor quality	0
Sequence length	51
%GC	49

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GAATGATACGGCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGC	5290	0.675549698237441	No Hit
GAATGATACCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCG	4195	0.5357147417969877	No Hit
GAATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTC	4120	0.5261370050544909	No Hit
CTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGCT	2626	0.33534848914395465	Illumina Single End Adapter 1 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2517	0.32142884507819264	No Hit
GCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	2442	0.31185110833569585	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	2012	0.2569387510120475	No Hit
TCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCTGC	1866	0.2382940901533204	No Hit
GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCACGGTGTT	1119	0.14289983219805227	No Hit
GAACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCTTCT	957	0.12221192083425919	No Hit
GAATGATCTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTC	938	0.11978556085949332	No Hit
GAATGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTATGCCGTCT	916	0.1169760914150276	No Hit
GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCACGGTGTTCGTA	876	0.11186796515236264	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTCACGT	25	3.8896633E-5	45.0	15
CGCGATC	20	7.0319074E-4	45.0	21
TAACGAA	20	7.0319074E-4	45.0	19
CCGTCGA	20	7.0319074E-4	45.0	35
GTTACGG	35	1.211265E-7	45.0	2
AATTCGC	25	3.8896633E-5	45.0	13
CATACGT	20	7.0319074E-4	45.0	1
GCGATAT	20	7.0319074E-4	45.0	9
ACCGTTA	25	3.8896633E-5	45.0	23
CAATCGG	25	3.8896633E-5	45.0	20
TACGTCG	40	6.8102963E-9	45.0	38
ACGCGCA	25	3.8896633E-5	45.0	15
CGATGAA	215	0.0	42.906975	19
TACGAAT	75	0.0	42.0	12
AGCTACG	75	0.0	42.0	9
TTATGCG	55	6.002665E-11	40.909092	1
GGCGATA	50	1.0804797E-9	40.5	8
CCGATGA	230	0.0	40.108692	18
TCGATTG	45	1.9270374E-8	40.000004	1
TATGGGA	480	0.0	39.843746	4