##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933119.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1001852 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.46069878584861 33.0 31.0 34.0 31.0 34.0 2 32.833611152146226 34.0 31.0 34.0 31.0 34.0 3 32.87780530457592 34.0 31.0 34.0 31.0 34.0 4 36.32457688361155 37.0 37.0 37.0 35.0 37.0 5 36.18622810554852 37.0 35.0 37.0 35.0 37.0 6 36.296141545857076 37.0 37.0 37.0 35.0 37.0 7 36.49944702411135 37.0 37.0 37.0 35.0 37.0 8 36.423755205359676 37.0 37.0 37.0 35.0 37.0 9 38.26532262250313 39.0 39.0 39.0 37.0 39.0 10 38.00982879706783 39.0 39.0 39.0 35.0 39.0 11 37.67766795894004 39.0 37.0 39.0 35.0 39.0 12 37.19039638589332 39.0 35.0 39.0 35.0 39.0 13 37.06175363227303 39.0 35.0 39.0 34.0 39.0 14 37.82772804765574 40.0 35.0 41.0 33.0 41.0 15 38.10285151898684 40.0 35.0 41.0 33.0 41.0 16 38.29239747986728 40.0 35.0 41.0 34.0 41.0 17 38.348055401396614 40.0 35.0 41.0 35.0 41.0 18 38.300474521186764 40.0 36.0 41.0 35.0 41.0 19 38.254648391179536 40.0 35.0 41.0 35.0 41.0 20 38.09985407026188 40.0 35.0 41.0 34.0 41.0 21 38.03534054930269 40.0 35.0 41.0 34.0 41.0 22 37.966238526249384 40.0 35.0 41.0 34.0 41.0 23 37.9680731285659 40.0 35.0 41.0 34.0 41.0 24 37.94455967548101 40.0 35.0 41.0 34.0 41.0 25 37.76708036716002 40.0 35.0 41.0 34.0 41.0 26 37.688368142200645 39.0 35.0 41.0 34.0 41.0 27 37.58355325936366 39.0 35.0 41.0 34.0 41.0 28 37.56169573949046 39.0 35.0 41.0 34.0 41.0 29 37.50612665343783 39.0 35.0 41.0 34.0 41.0 30 37.43962980560003 39.0 35.0 41.0 34.0 41.0 31 37.281492675564856 39.0 35.0 41.0 33.0 41.0 32 37.16614729520927 39.0 35.0 41.0 33.0 41.0 33 37.05564195110655 39.0 35.0 41.0 33.0 41.0 34 36.875104306823765 39.0 35.0 41.0 33.0 41.0 35 36.810799399512106 39.0 35.0 41.0 32.0 41.0 36 36.72247198188954 39.0 35.0 41.0 32.0 41.0 37 36.60409321935775 39.0 35.0 41.0 32.0 41.0 38 36.628390221310134 39.0 35.0 41.0 32.0 41.0 39 36.60637998426913 39.0 35.0 41.0 32.0 41.0 40 36.50938961044146 39.0 35.0 41.0 32.0 41.0 41 36.33091115254548 39.0 35.0 41.0 31.0 41.0 42 36.38387107077692 39.0 35.0 41.0 31.0 41.0 43 36.353144975505366 38.0 35.0 41.0 32.0 41.0 44 36.31363015694933 38.0 35.0 41.0 31.0 41.0 45 36.25849826122022 38.0 35.0 41.0 31.0 41.0 46 36.22618610333662 38.0 35.0 41.0 31.0 41.0 47 36.12582097954588 38.0 35.0 41.0 31.0 41.0 48 36.00596894551291 38.0 35.0 41.0 31.0 41.0 49 36.005843178433544 38.0 35.0 41.0 31.0 41.0 50 35.90413154837241 37.0 35.0 41.0 31.0 41.0 51 35.829246235970984 37.0 35.0 41.0 31.0 41.0 52 35.567572855072406 37.0 35.0 40.0 30.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 1.0 13 6.0 14 7.0 15 14.0 16 65.0 17 105.0 18 211.0 19 400.0 20 711.0 21 1129.0 22 1656.0 23 2864.0 24 4707.0 25 6987.0 26 8939.0 27 10106.0 28 10788.0 29 11731.0 30 13844.0 31 16597.0 32 21443.0 33 30858.0 34 79953.0 35 128199.0 36 62546.0 37 73936.0 38 114969.0 39 396706.0 40 2374.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 39.318282540734565 22.502026247389832 24.773419626851073 13.406271585024534 2 39.37966885328372 22.657538239181036 24.80585954811689 13.156933359418357 3 36.05941795794189 22.583874664122046 27.787836926013025 13.568870451923038 4 32.21254237152793 25.50905722601742 27.911408072250193 14.36699233020446 5 26.174924040676668 28.60672035390457 30.493026914154985 14.725328691263778 6 27.54917892063898 35.640294175187556 27.408040309347086 9.402486594826382 7 83.77135544970714 2.2768832122908376 10.550660177351546 3.401101160650475 8 81.10060168567811 2.6037778035079033 11.132183196719675 5.163437314094297 9 74.63487620926045 4.683725739929651 14.314289935040305 6.367108115769595 10 51.634672586370044 16.800685131137133 19.569457364960094 11.995184917532729 11 34.67617971516751 23.99745671017276 25.663870511812124 15.662493062847608 12 33.333566235332164 17.369831072853074 31.908505447910468 17.388097243904287 13 30.281518627501868 19.548096924495834 34.72598747120333 15.444396976798968 14 18.348817989084214 21.687135425192544 41.036200955829806 18.927845629893437 15 15.359554105796066 28.146273102214696 40.04583511337004 16.448337678619197 16 29.63850948044222 23.960425292358554 30.106742313235884 16.29432291396334 17 25.737234641444047 23.514950312022133 26.466184626072515 24.281630420461305 18 22.597549338624866 23.943356903015616 34.47345516104175 18.985638597317767 19 23.523434599122425 25.5504805100953 27.274487648874285 23.651597241907986 20 17.815605498616563 37.979861296878184 25.669360344641724 18.535172859863533 21 24.200380894583233 27.086435920674912 32.9863093550744 15.726873829667456 22 18.673416832027087 22.957782187388958 36.71650104007379 21.652299940510176 23 21.566858178653135 23.140044637331663 34.6039135521015 20.689183631913696 24 23.580229415123192 27.837345236621776 28.863844160614544 19.718581187640492 25 24.12981158893729 23.925789437960894 31.365111812922468 20.579287160179348 26 18.28164239827839 28.952979082738768 27.32689059861137 25.43848792037147 27 23.76897984931906 25.03343807268938 31.472512906097904 19.725069171893654 28 17.335794109309557 30.044657294690236 26.17442496496489 26.445123631035322 29 22.95269161512878 28.366864566822247 26.82022893601051 21.860214882038463 30 26.20536765909536 24.865549003245988 26.67689439158678 22.252188946071875 31 22.396222196492097 26.622095878433143 29.811389307003427 21.170292618071333 32 27.1655893285635 24.78439929251027 25.49687977864994 22.553131600276288 33 25.711582149858465 24.927334576364572 29.839237731720853 19.521845542056113 34 18.172344817398177 24.44363039650567 34.201658528405396 23.182366257690756 35 21.34187484778191 28.49742277302436 28.439130729888245 21.721571649305485 36 25.019364137617135 24.898987075935366 26.681286257850463 23.40036252859704 37 18.577095219653202 29.920087997029498 27.335374885711662 24.167441897605634 38 23.499978040668683 24.172931730435234 29.844128673696314 22.482961555199772 39 19.750322402909813 25.868491553642652 28.734184290693637 25.6470017527539 40 26.98432503004436 20.836910042601104 30.25706391762456 21.92170100972998 41 18.73081053888199 22.97814447642965 27.22497933826553 31.066065646422825 42 17.88577554369308 26.070816847198984 32.86193968769838 23.18146792140955 43 18.782914043192008 26.64834726087286 32.702335275070574 21.866403420864557 44 24.321855922830917 24.174928033282363 28.29060579806199 23.212610245824735 45 19.62196012983954 23.12607051740177 26.573086643536172 30.67888270922252 46 22.75994857523866 22.402011474748765 29.26550029345652 25.57253965655606 47 17.9904816280249 23.526828313962543 32.46896747224141 26.013722585771156 48 18.26597142092844 28.801559511784173 28.66311590933591 24.269353157951475 49 24.911064708160488 23.478218339634996 30.054538993783513 21.556177958421006 50 21.75600787341843 22.781109385418205 29.280772010237037 26.182110730926322 51 19.4800229974088 24.780905762527798 27.471123479316304 28.2679477607471 52 19.878584860837726 25.618055361470553 29.424306184945483 25.079053592746238 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 745.0 1 2058.0 2 3371.0 3 8614.0 4 13857.0 5 8428.5 6 3000.0 7 3490.0 8 3980.0 9 5062.5 10 6145.0 11 7398.5 12 8652.0 13 9017.0 14 8768.5 15 8155.0 16 7480.5 17 6806.0 18 6407.0 19 6008.0 20 5433.5 21 4859.0 22 4779.0 23 4699.0 24 4370.0 25 4041.0 26 5232.5 27 6424.0 28 7519.0 29 8614.0 30 8061.0 31 7508.0 32 8891.0 33 10274.0 34 11557.0 35 12840.0 36 14796.5 37 16753.0 38 18482.5 39 23209.0 40 26206.0 41 33102.0 42 39998.0 43 51535.5 44 63073.0 45 75421.5 46 87770.0 47 92448.0 48 97126.0 49 99992.5 50 102859.0 51 85807.5 52 68756.0 53 65125.5 54 61495.0 55 58770.0 56 56045.0 57 55003.0 58 53961.0 59 61035.0 60 68109.0 61 51022.5 62 33936.0 63 28470.5 64 20724.0 65 18443.0 66 14903.0 67 11363.0 68 9497.0 69 7631.0 70 6837.5 71 6044.0 72 5028.0 73 4012.0 74 3245.0 75 2478.0 76 2010.5 77 1543.0 78 1179.5 79 816.0 80 604.5 81 393.0 82 317.0 83 241.0 84 164.5 85 88.0 86 64.0 87 40.0 88 60.0 89 44.0 90 8.0 91 6.5 92 5.0 93 3.5 94 2.0 95 1.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1001852.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.062374669403802 #Duplication Level Percentage of deduplicated Percentage of total 1 69.30834758893484 14.59798384635415 2 12.020090365930809 5.063432936946515 3 5.201393997569242 3.2866112753997414 4 2.778579888197235 2.3409396261632116 5 1.6863606494296222 1.7759379913012912 6 1.0822546605867795 1.3676911889392318 7 0.7875754722000207 1.1611746773136618 8 0.5530300339235467 0.9318500622344665 9 0.4661017130737487 0.883548802332922 >10 4.051168496392943 18.724400078532852 >50 1.3039966477800298 19.914070073109713 >100 0.7420848585988056 20.856380017985206 >500 0.009507813691208272 1.364051469951475 >1k 0.00808164163752703 3.1099932949198275 >5k 0.0 0.0 >10k+ 0.0014261720536812407 4.621934658515752 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 23181 2.313814814962689 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 12068 1.2045691379565044 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10911 1.0890830182502005 No Hit CTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCTT 3324 0.33178553319252746 Illumina Single End Adapter 2 (95% over 21bp) GCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT 2899 0.2893640976910761 No Hit GGGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCT 2634 0.2629130849666418 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA 2557 0.25522731900520235 No Hit GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCTAAGTCCTTCG 2529 0.2524324950192244 No Hit CCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGCT 2440 0.24354894734950872 No Hit GGGGTTGGGGATTTAGCTCCTGTCTCTTATACACATCTGACGCTAAGTCCTT 1747 0.17437705369655399 No Hit GGGGTTGGGGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCG 1570 0.15670977349947895 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCG 1470 0.14672825926384336 No Hit GGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1469 0.14662844412148698 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCCTGTCTCTTATACACATCTG 1451 0.1448317715590726 No Hit TGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1415 0.14123842643424378 No Hit CGCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCCGTCTTCTGC 1155 0.11528648942159123 No Hit GGGGTTGGGGACTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGCC 1124 0.11219222000854417 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGCTGTCTCTTATACACATCTGACGCT 1117 0.11149351401204968 No Hit AGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG 1086 0.10839924459900266 No Hit GGGGTTGGGGATCTGTCTCTTATACACATCTGACGCTAAGTCCTTCGTATGC 1073 0.10710164774837001 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 9.981514235635602E-5 0.0 0.0 0.3420664928552321 0.0 2 9.981514235635602E-5 0.0 0.0 1.0649277537999624 0.0 3 1.9963028471271205E-4 0.0 0.0 1.5939480082886495 0.0 4 1.9963028471271205E-4 0.0 0.0 2.2121031849015624 0.0 5 1.9963028471271205E-4 0.0 0.0 4.103001241700371 0.0 6 1.9963028471271205E-4 0.0 0.0 5.7542431417015685 0.0 7 1.9963028471271205E-4 0.0 0.0 7.218132019499886 0.0 8 1.9963028471271205E-4 0.0 0.0 9.728882110331666 0.0 9 1.9963028471271205E-4 0.0 0.0 11.041850492887173 0.0 10 1.9963028471271205E-4 0.0 0.0 12.323277290458071 0.0 11 1.9963028471271205E-4 0.0 0.0 14.372981238745842 0.0 12 1.9963028471271205E-4 0.0 0.0 15.5563895665228 0.0 13 1.9963028471271205E-4 0.0 0.0 16.061853447415388 0.0 14 1.9963028471271205E-4 0.0 0.0 16.301809049640067 0.0 15 1.9963028471271205E-4 0.0 0.0 16.638984600519837 0.0 16 1.9963028471271205E-4 0.0 0.0 17.24426362376878 0.0 17 1.9963028471271205E-4 0.0 0.0 17.88717295568607 0.0 18 1.9963028471271205E-4 0.0 0.0 18.671220898895246 0.0 19 1.9963028471271205E-4 0.0 0.0 19.111705122113847 0.0 20 1.9963028471271205E-4 0.0 0.0 19.737546064688196 0.0 21 1.9963028471271205E-4 0.0 0.0 20.286828793075223 0.0 22 1.9963028471271205E-4 0.0 0.0 20.88651816835221 0.0 23 4.990757117817802E-4 0.0 0.0 21.37850700502669 0.0 24 4.990757117817802E-4 0.0 0.0 21.73654392065894 0.0 25 4.990757117817802E-4 0.0 0.0 22.172037386759722 0.0 26 4.990757117817802E-4 0.0 0.0 22.496736044844948 0.0 27 4.990757117817802E-4 0.0 0.0 23.049113042645022 0.0 28 4.990757117817802E-4 0.0 0.0 23.472429061378328 0.0 29 4.990757117817802E-4 0.0 0.0 23.99855467673868 0.0 30 4.990757117817802E-4 0.0 0.0 25.583918582784683 0.0 31 4.990757117817802E-4 0.0 0.0 26.098565456774054 0.0 32 4.990757117817802E-4 0.0 0.0 26.422565408862788 0.0 33 4.990757117817802E-4 0.0 0.0 26.889899905375245 0.0 34 4.990757117817802E-4 0.0 0.0 27.367814806977478 0.0 35 4.990757117817802E-4 0.0 0.0 27.824568898400162 0.0 36 4.990757117817802E-4 0.0 0.0 28.134095654847222 0.0 37 4.990757117817802E-4 0.0 0.0 28.552221286178 0.0 38 4.990757117817802E-4 0.0 0.0 29.078546531823065 0.0 39 4.990757117817802E-4 0.0 0.0 30.911252360628115 0.0 40 4.990757117817802E-4 0.0 0.0 31.315902947740785 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGCGTAG 35 1.01939804E-7 46.000004 1 AACGCGT 35 1.01939804E-7 46.000004 38 TTACCGA 35 1.01939804E-7 46.000004 13 TACCGAT 35 1.01939804E-7 46.000004 14 ACGCGTC 35 1.01939804E-7 46.000004 39 CGGACAC 25 3.416839E-5 46.0 32 ATTAGTT 20 6.311066E-4 46.0 44 CGTATTC 25 3.416839E-5 46.0 45 CGTATCG 20 6.311066E-4 46.0 40 CCGATCA 20 6.311066E-4 46.0 36 ACGTTAG 20 6.311066E-4 46.0 1 TAGACCG 20 6.311066E-4 46.0 1 ACACCGT 20 6.311066E-4 46.0 37 CGTTGTC 20 6.311066E-4 46.0 43 TAGCGTA 25 3.416839E-5 46.0 44 TTCACGC 30 1.8611627E-6 46.0 35 ACCGAGT 20 6.311066E-4 46.0 27 CACGCAC 20 6.311066E-4 46.0 39 GCACGAT 20 6.311066E-4 46.0 41 CGATTAC 45 3.092282E-10 46.0 41 >>END_MODULE