##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933112.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1005516 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.479023705241886 33.0 31.0 34.0 31.0 34.0 2 32.81429335783817 34.0 31.0 34.0 31.0 34.0 3 32.845696140091256 34.0 31.0 34.0 31.0 34.0 4 36.315006424562114 37.0 37.0 37.0 35.0 37.0 5 36.280435119878746 37.0 37.0 37.0 35.0 37.0 6 36.44610428874329 37.0 37.0 37.0 35.0 37.0 7 36.50923903746932 37.0 37.0 37.0 35.0 37.0 8 36.3467811551482 37.0 37.0 37.0 35.0 37.0 9 38.016797345840345 39.0 39.0 39.0 35.0 39.0 10 37.842123844871686 39.0 38.0 39.0 35.0 39.0 11 37.189173518869914 39.0 35.0 39.0 35.0 39.0 12 36.9640522875817 39.0 35.0 39.0 33.0 39.0 13 36.81698650245247 39.0 35.0 39.0 33.0 39.0 14 38.22227592599223 40.0 35.0 41.0 34.0 41.0 15 38.350996901093566 40.0 35.0 41.0 35.0 41.0 16 38.3647758961568 40.0 35.0 41.0 35.0 41.0 17 38.36870621650973 40.0 36.0 41.0 35.0 41.0 18 38.246906066139175 40.0 36.0 41.0 35.0 41.0 19 38.03330926608826 40.0 35.0 41.0 34.0 41.0 20 37.901216887647735 40.0 35.0 41.0 34.0 41.0 21 37.87716754382824 40.0 35.0 41.0 34.0 41.0 22 37.839024938439564 40.0 35.0 41.0 34.0 41.0 23 37.78910728422024 40.0 35.0 41.0 34.0 41.0 24 37.69735041511025 39.0 35.0 41.0 34.0 41.0 25 37.60976453880396 39.0 35.0 41.0 34.0 41.0 26 37.515255848738356 39.0 35.0 41.0 34.0 41.0 27 37.469647424804776 39.0 35.0 41.0 34.0 41.0 28 37.445480728302684 39.0 35.0 41.0 34.0 41.0 29 37.40213681333763 39.0 35.0 41.0 34.0 41.0 30 37.19827133531441 39.0 35.0 41.0 34.0 41.0 31 37.12022483978375 39.0 35.0 41.0 34.0 41.0 32 36.965052768926604 38.0 35.0 41.0 33.0 41.0 33 36.74475194825344 38.0 35.0 41.0 33.0 41.0 34 36.54910513606944 38.0 35.0 41.0 33.0 41.0 35 36.44276371534615 38.0 35.0 41.0 32.0 41.0 36 36.349287331081754 38.0 35.0 41.0 32.0 41.0 37 36.26672673532793 38.0 35.0 41.0 32.0 41.0 38 36.27950723807478 38.0 35.0 41.0 32.0 41.0 39 36.16650157729961 38.0 35.0 41.0 31.0 41.0 40 36.10850647826589 38.0 35.0 41.0 31.0 41.0 41 36.06481448331006 38.0 35.0 41.0 31.0 41.0 42 35.96768425365683 37.0 35.0 41.0 31.0 41.0 43 35.85033853265388 37.0 35.0 41.0 31.0 41.0 44 35.741988193126716 37.0 35.0 41.0 31.0 41.0 45 35.69342407281436 37.0 35.0 41.0 31.0 41.0 46 35.59889449794931 36.0 35.0 40.0 31.0 41.0 47 35.49502345064624 36.0 35.0 40.0 31.0 41.0 48 35.46514426423846 36.0 35.0 40.0 30.0 41.0 49 35.338179601319126 36.0 35.0 40.0 30.0 41.0 50 35.19369855874994 36.0 35.0 40.0 30.0 41.0 51 35.06320038666714 36.0 35.0 40.0 29.0 41.0 52 34.81361609362755 35.0 35.0 40.0 28.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 2.0 12 0.0 13 5.0 14 4.0 15 25.0 16 32.0 17 94.0 18 214.0 19 415.0 20 735.0 21 1196.0 22 1840.0 23 3040.0 24 5038.0 25 7932.0 26 10612.0 27 11721.0 28 11810.0 29 12673.0 30 13844.0 31 17023.0 32 21251.0 33 28775.0 34 72428.0 35 172060.0 36 78338.0 37 72761.0 38 105425.0 39 352652.0 40 3570.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.417715879210277 23.22479204706837 24.27927551625235 22.078216557469002 2 28.500690192895984 22.95169843145211 27.354114703296617 21.193496672355288 3 25.149773847457425 24.41144646131936 29.570389730247953 20.86838996097526 4 23.390080316971584 27.741080201607932 27.313041264385653 21.555798217034834 5 21.349436508220656 35.200931660958155 25.43251425138934 18.017117579431854 6 82.16706646139892 3.91828673039514 11.304842488831605 2.609804319374331 7 84.17031653399847 3.239829102669674 8.732730259886466 3.857124103445395 8 76.44532757310675 4.840997060215849 13.396902684790696 5.316772681886714 9 45.634778561455015 22.08696828295124 17.464863811217327 14.813389344376422 10 39.3000210837023 20.812896065303786 25.751355522935487 14.135727328058428 11 34.32735033554911 20.497833947943146 28.298903249674794 16.875912466832947 12 21.845301317930296 32.573822793471216 30.40578170809813 15.17509418050036 13 14.344575322520974 35.46099713977699 34.11959630677185 16.07483123093019 14 13.600977010808382 26.274967280480865 44.609036554366114 15.515019154344634 15 17.31618392944518 21.238448716877702 42.28097812466435 19.164389229012766 16 17.160343545005748 24.2558049797318 29.88236885340462 28.70148262185783 17 20.30161628457429 26.29038225150072 33.60344340617156 19.804558057753432 18 24.967280480867533 30.597424605873996 27.574001806037895 16.861293107220572 19 22.650460062296375 28.858019166278808 27.167543828243407 21.32397694318141 20 18.450029636524928 32.25239578485076 30.001909467377942 19.295665111246365 21 16.538672681488908 28.753097911917862 29.515591994558015 25.19263741203521 22 13.650006563794111 33.826910760246484 27.3091626587742 25.213920017185202 23 15.86061285946718 30.792846657835383 35.50226948153983 17.844271001157612 24 19.40187923414446 27.518806264644226 32.86720449997812 20.212110001233196 25 14.512449329498486 33.15750321228106 28.958862912176436 23.37118454604402 26 15.018557636079386 32.14240250776715 31.26782666809877 21.571213188054692 27 18.359329936072623 29.361939541489146 33.08898117981215 19.189749342626076 28 15.507759200251414 31.128992477494144 30.588573428965827 22.774674893288623 29 22.21715019949956 29.93408359489058 28.869853885965018 18.978912319644838 30 24.9478874528103 29.917574658185448 25.758714928454644 19.37582296054961 31 28.668663651299433 28.977659231678064 23.02390016668059 19.329776950341916 32 25.351361887826744 30.039402654955268 21.996666388202673 22.61256906901531 33 19.258669180798716 29.727423531798596 27.73471531034812 23.279191977054566 34 18.629141654633045 30.401505296782943 26.820856157435585 24.148496891148426 35 26.690077532331657 27.391210085170204 23.969782678744046 21.948929703754093 36 18.01115049387578 35.22181646040441 25.337339236769978 21.429693808949832 37 19.921413483226523 30.796128554891222 26.07367759438935 23.20878036749291 38 16.867757449906318 30.64575799887819 24.686827459732115 27.799657091483375 39 22.745833979767603 27.51791120181081 26.80056806654494 22.93568675187665 40 16.332112069822855 26.270889772017554 29.61564012904817 27.78135802911142 41 19.96795675056389 29.90673445275858 25.230826759594077 24.89448203708345 42 20.103807398390476 26.66730315579265 28.01586449146508 25.2130249543518 43 21.013489591413762 29.076812303334805 29.18372258621444 20.725975519036993 44 17.30653714112953 33.17102860620816 24.75316156083046 24.769272691831855 45 20.704792365312937 28.879401222854735 26.994995604246974 23.42081080758536 46 21.77598367405392 28.482788936227767 26.75114070785547 22.990086681862845 47 19.44872085575963 27.569824846148645 29.87033523086654 23.111119067225186 48 20.09793976426034 24.8056719137239 29.58739592408276 25.508992397933 49 19.24345311263073 28.908142684949816 28.55678079712307 23.291623405296384 50 17.734675529777746 29.596247100990936 28.267377147653544 24.401700221577777 51 17.926616781831417 25.449918250927883 30.235321964046317 26.38814300319438 52 20.320611506927786 24.63501326682022 31.209548132501126 23.83482709375087 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 5386.0 1 3924.0 2 2462.0 3 13359.0 4 24256.0 5 14173.5 6 4091.0 7 5206.5 8 6322.0 9 8153.5 10 9985.0 11 11541.5 12 13098.0 13 13317.0 14 12291.5 15 11047.0 16 9639.5 17 8232.0 18 7562.5 19 6893.0 20 6254.0 21 5615.0 22 5691.0 23 5767.0 24 5409.0 25 5051.0 26 5274.0 27 5497.0 28 5613.5 29 5730.0 30 6689.5 31 7649.0 32 8543.5 33 9438.0 34 12293.5 35 15149.0 36 15750.5 37 16352.0 38 18753.5 39 22920.0 40 24685.0 41 35266.5 42 45848.0 43 56885.0 44 67922.0 45 73164.0 46 78406.0 47 80824.0 48 83242.0 49 93313.5 50 103385.0 51 105084.5 52 106784.0 53 94401.5 54 82019.0 55 70586.0 56 59153.0 57 51689.5 58 44226.0 59 38739.0 60 33252.0 61 28729.5 62 24207.0 63 20756.5 64 14982.5 65 12659.0 66 9379.5 67 6100.0 68 5260.0 69 4420.0 70 3923.0 71 3426.0 72 2990.0 73 2554.0 74 1918.0 75 1282.0 76 1156.5 77 1031.0 78 787.5 79 544.0 80 369.0 81 194.0 82 138.0 83 82.0 84 74.5 85 67.0 86 35.5 87 4.0 88 3.5 89 3.0 90 3.0 91 2.0 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1005516.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.77124820356529 #Duplication Level Percentage of deduplicated Percentage of total 1 71.80402176012315 17.78675245034213 2 11.345296680022066 5.620743200078237 3 4.621706800204066 3.434563388158814 4 2.468845745486182 2.446255629510176 5 1.5328481252744748 1.898528068477188 6 1.0289510319089832 1.5293040840439227 7 0.7254495650555804 1.2579203864612187 8 0.5719184028122303 1.1333706166598712 9 0.42738313781692056 0.952813240639334 >10 3.7573644835212106 20.831061949679693 >50 1.2951191971101121 23.106623579773487 >100 0.41021510233210423 14.29013992779645 >500 0.006447388641761951 1.22776958188261 >1k 0.00402961790110122 2.3985427059396125 >5k 0.0 0.0 >10k+ 4.0296179011012193E-4 2.0856111905573376 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 20894 2.0779380934763845 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 4959 0.49317962120940895 No Hit CTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCTT 3433 0.3414167452332932 Illumina Single End Adapter 2 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT 2761 0.2745853870052789 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2587 0.25728083889266806 No Hit GCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGCT 2157 0.21451672574081368 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCG 2136 0.21242824579618824 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1692 0.16827181268125022 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1674 0.1664816870144284 No Hit CGCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC 1536 0.1527573902354612 No Hit ACCTGTCTCTTATACACATCTGACGCGAGCTCCATCGTATGCCGTCTTCTGC 1094 0.10879985997239228 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.352157499234224 0.0 2 0.0 0.0 0.0 1.004658304790774 0.0 3 0.0 0.0 0.0 1.7995735522855927 0.0 4 0.0 0.0 0.0 2.3401915036657797 0.0 5 0.0 0.0 0.0 5.00270507878542 0.0 6 0.0 0.0 0.0 5.755850727387729 0.0 7 0.0 0.0 0.0 7.681926493462063 0.0 8 0.0 0.0 0.0 10.116696303191596 0.0 9 0.0 0.0 0.0 12.126112364199077 0.0 10 0.0 0.0 0.0 13.494762887910287 0.0 11 0.0 0.0 0.0 14.823831744099547 0.0 12 0.0 0.0 0.0 15.754796542272823 0.0 13 0.0 0.0 0.0 16.13917630350984 0.0 14 0.0 0.0 0.0 16.382335039919802 0.0 15 0.0 0.0 0.0 17.064174016127044 0.0 16 0.0 0.0 0.0 17.975149077687476 0.0 17 0.0 0.0 0.0 18.983387633811894 0.0 18 0.0 0.0 0.0 19.473086455113595 0.0 19 0.0 0.0 0.0 20.05597126251596 0.0 20 0.0 0.0 0.0 20.66003922364239 0.0 21 0.0 0.0 0.0 21.25416204217536 0.0 22 0.0 0.0 0.0 21.86678282593216 0.0 23 0.0 0.0 0.0 22.272445192319168 0.0 24 2.9835427780363515E-4 0.0 0.0 22.631265937091005 0.0 25 2.9835427780363515E-4 0.0 0.0 22.961444671193696 0.0 26 2.9835427780363515E-4 0.0 0.0 23.39147263693467 0.0 27 2.9835427780363515E-4 0.0 0.0 23.77008421546748 0.0 28 2.9835427780363515E-4 0.0 0.0 24.169282239168744 0.0 29 2.9835427780363515E-4 0.0 0.0 24.554159257535435 0.0 30 2.9835427780363515E-4 0.0 0.0 24.936848344531565 0.0 31 2.9835427780363515E-4 0.0 0.0 25.25091594763286 0.0 32 2.9835427780363515E-4 0.0 0.0 25.615604326534832 0.0 33 2.9835427780363515E-4 0.0 0.0 26.005155561920446 0.0 34 3.978057037381802E-4 0.0 0.0 26.47347232664622 0.0 35 3.978057037381802E-4 0.0 0.0 26.81787261465755 0.0 36 3.978057037381802E-4 0.0 0.0 27.200959507357418 0.0 37 3.978057037381802E-4 0.0 0.0 27.62024671909746 0.0 38 3.978057037381802E-4 0.0 0.0 28.49512091304365 0.0 39 3.978057037381802E-4 0.0 0.0 28.88327982846618 0.0 40 4.972571296727252E-4 0.0 0.0 29.254333098627967 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGGGTAC 55 1.8189894E-12 46.000004 5 GTTACGG 105 0.0 46.000004 1 ACTATCC 20 6.311076E-4 46.0 16 AATCCGT 20 6.311076E-4 46.0 34 CTCACGG 85 0.0 46.0 1 CTCACGA 60 0.0 46.0 23 CGAACTC 20 6.311076E-4 46.0 12 GTATTCG 20 6.311076E-4 46.0 28 CGTATAT 20 6.311076E-4 46.0 38 GTACACG 20 6.311076E-4 46.0 8 AGTCAAC 30 1.8611681E-6 46.0 19 TTAGCGA 20 6.311076E-4 46.0 25 GCGCGCA 20 6.311076E-4 46.0 44 ACACCGA 25 3.4168483E-5 46.0 29 TCGGGTA 30 1.8611681E-6 46.0 4 CGACCGT 25 3.4168483E-5 46.0 31 CGTCTAC 20 6.311076E-4 46.0 17 TACGGCA 20 6.311076E-4 46.0 18 CCGTCTA 20 6.311076E-4 46.0 16 ACCTAGT 20 6.311076E-4 46.0 28 >>END_MODULE