##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933111.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 642704 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.33599915357614 33.0 31.0 34.0 31.0 34.0 2 32.69065697428365 34.0 31.0 34.0 31.0 34.0 3 32.72877561054545 34.0 31.0 34.0 31.0 34.0 4 36.21152816848814 37.0 37.0 37.0 35.0 37.0 5 36.079213759366674 37.0 35.0 37.0 35.0 37.0 6 36.190443812392644 37.0 36.0 37.0 35.0 37.0 7 36.44707361398093 37.0 37.0 37.0 35.0 37.0 8 36.33135160198163 37.0 37.0 37.0 35.0 37.0 9 38.17144595334711 39.0 39.0 39.0 37.0 39.0 10 37.93864360576564 39.0 38.0 39.0 35.0 39.0 11 37.63315460927581 39.0 37.0 39.0 35.0 39.0 12 37.16726362368991 39.0 35.0 39.0 35.0 39.0 13 37.04263549005452 39.0 35.0 39.0 33.0 39.0 14 37.87724208967114 40.0 36.0 41.0 33.0 41.0 15 38.149840361970675 40.0 36.0 41.0 33.0 41.0 16 38.381013654808434 40.0 36.0 41.0 34.0 41.0 17 38.40239363688416 40.0 36.0 41.0 35.0 41.0 18 38.40055453210187 40.0 36.0 41.0 35.0 41.0 19 38.35386585426573 40.0 36.0 41.0 35.0 41.0 20 38.21425881898977 40.0 35.0 41.0 34.0 41.0 21 38.14761227563544 40.0 35.0 41.0 34.0 41.0 22 38.09121617416416 40.0 35.0 41.0 34.0 41.0 23 38.07997771913665 40.0 35.0 41.0 34.0 41.0 24 37.9929189798103 40.0 35.0 41.0 34.0 41.0 25 37.857676317558315 40.0 35.0 41.0 34.0 41.0 26 37.794756217481144 40.0 35.0 41.0 34.0 41.0 27 37.708937551345564 40.0 35.0 41.0 34.0 41.0 28 37.68973119818766 40.0 35.0 41.0 34.0 41.0 29 37.678114653090695 40.0 35.0 41.0 34.0 41.0 30 37.66560189449576 40.0 35.0 41.0 34.0 41.0 31 37.537595845054646 40.0 35.0 41.0 34.0 41.0 32 37.49709041798402 40.0 35.0 41.0 34.0 41.0 33 37.42987284970997 40.0 35.0 41.0 34.0 41.0 34 37.312230824765365 40.0 35.0 41.0 33.0 41.0 35 37.264530794891584 40.0 35.0 41.0 33.0 41.0 36 37.20370497149543 40.0 35.0 41.0 33.0 41.0 37 37.06074491523314 39.0 35.0 41.0 33.0 41.0 38 37.0680593243546 39.0 35.0 41.0 33.0 41.0 39 37.04944266723095 39.0 35.0 41.0 33.0 41.0 40 36.93053256242376 39.0 35.0 41.0 33.0 41.0 41 36.81410727177674 39.0 35.0 41.0 33.0 41.0 42 36.83394999875526 39.0 35.0 41.0 33.0 41.0 43 36.742469317135104 39.0 35.0 41.0 33.0 41.0 44 36.696933580621874 39.0 35.0 41.0 33.0 41.0 45 36.63598795090741 39.0 35.0 41.0 32.0 41.0 46 36.574213012522094 39.0 35.0 41.0 32.0 41.0 47 36.47586291667704 38.0 35.0 41.0 32.0 41.0 48 36.41529382110583 38.0 35.0 41.0 32.0 41.0 49 36.422407515745974 38.0 35.0 41.0 32.0 41.0 50 36.27462253230103 38.0 35.0 41.0 31.0 41.0 51 36.20530757549354 38.0 35.0 41.0 31.0 41.0 52 35.95783284373522 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 10 1.0 11 1.0 12 2.0 13 2.0 14 3.0 15 6.0 16 33.0 17 68.0 18 114.0 19 198.0 20 327.0 21 548.0 22 827.0 23 1334.0 24 2213.0 25 3305.0 26 4315.0 27 5300.0 28 5839.0 29 6863.0 30 8386.0 31 10660.0 32 13546.0 33 19075.0 34 44722.0 35 88497.0 36 46530.0 37 46881.0 38 66724.0 39 261868.0 40 4516.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.81928850606189 24.596392740670666 25.814682964475093 13.769635788792353 2 34.097811745375786 23.584885110408525 27.229019890960693 15.088283253254996 3 30.789912619183944 24.98957529438124 30.684887599890466 13.53562448654435 4 29.526500535238615 25.807214518658668 29.43485648136623 15.231428464736489 5 23.528093803679454 30.29901789937514 30.1199307924021 16.052957504543304 6 24.52637606114168 36.89770096342951 27.21548333291842 11.360439642510393 7 81.75349772212402 1.7336129851377928 11.391713759366676 5.121175533371505 8 76.32284846523439 1.9601558415693692 12.98638253379472 8.730613159401528 9 70.07331524309791 3.612393885832358 17.47678558092061 8.83750529014912 10 47.65055142024945 17.74222659264607 20.762746147526702 13.844475839577782 11 31.264625706390497 20.307170952724736 29.418363663521625 19.009839677363143 12 29.264326968557842 18.514432771540243 32.74820134929921 19.473038910602703 13 24.409992780502378 24.47051831013966 35.953564938136374 15.16592397122159 14 14.092490477731584 29.51529786651398 36.786452239289005 19.605759416465435 15 10.640979362194727 30.365300355995917 41.03055216709402 17.963168114715327 16 19.496688989021386 27.29623590330852 36.246079065946375 16.960996041723718 17 16.107103736712393 29.198978067664115 27.130218576514224 27.56369961910926 18 16.729163036172174 28.014918220518307 35.64471358510294 19.611205158206577 19 17.168867783614232 29.70729916104459 28.59839054992656 24.525442505414624 20 15.182105603823844 37.19612761084418 26.46552689885235 21.156239886479625 21 18.03271801638079 31.608952177051957 33.09315019044537 17.265179616121884 22 16.164517413926163 27.728316612312977 30.209552142199207 25.89761383156165 23 16.94559237222734 28.391607956384274 29.373397396001895 25.28940227538649 24 19.395242600014935 29.31878438596928 30.83783514650601 20.44813786750977 25 18.787342229082128 26.31849187184147 30.20395080783689 24.690215091239512 26 15.518963628668875 30.59090965670044 28.863987154273197 25.026139560357493 27 21.25006223704847 27.311483980183727 30.413845253802684 21.02460852896512 28 14.690899698772686 30.006036993701613 28.5224613507929 26.780601956732802 29 17.578387562548233 24.592969703004805 31.130816052179544 26.697826682267422 30 21.983525853269935 24.873036421120766 29.70325375289402 23.44018397271528 31 18.907615325250816 25.31383031691105 30.75210361223829 25.026450745599842 32 22.24352112325425 21.8273108616097 30.99389454554507 24.935273469590978 33 20.67841494684956 22.200266374567455 31.770457317832157 25.350861360750827 34 15.05514202494461 20.053088202345094 35.52910826756952 29.36266150514078 35 17.296920510841694 22.592048594687444 35.128612860663694 24.982418033807168 36 23.280701536010355 21.139435883392665 29.323140979362194 26.256721601234783 37 17.592546491075208 23.526071099604174 33.81416639697279 25.06721601234783 38 21.30623117329284 22.95006721601235 30.452899001717743 25.29080260897707 39 19.500578804550774 23.6581692349822 28.243172595782816 28.59807936468421 40 23.42680300729418 20.03924045906047 33.98843013268939 22.54552640095596 41 19.135558515272972 22.770824516418134 28.074976972292063 30.018639996016827 42 19.709072916925987 23.039999751051806 31.566786576713383 25.68414075530882 43 19.62536408673355 22.97885185092982 33.92323682441684 23.472547237919787 44 20.782350817794818 24.5917249620354 27.668413453160394 26.957510767009385 45 18.36957604122582 23.65147875227165 28.790236251835992 29.18870895466653 46 24.843473823097415 21.404565709875776 30.045713112101375 23.706247354925438 47 18.40380641788444 22.599828225746222 32.8386006622022 26.157764694167145 48 17.329750553909733 24.100363464363067 30.94923946326769 27.62064651845951 49 25.037031043839775 19.43414075530882 31.250311185242353 24.27851701560905 50 20.4931041350295 20.069114242326172 32.01100351016953 27.426778112474793 51 17.510860364958052 21.65693694142249 27.902269162787224 32.92993353083224 52 18.241212128756008 22.593137743035673 34.15724812666484 25.008402001543477 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 618.0 1 1209.5 2 1801.0 3 5608.5 4 9416.0 5 5349.5 6 1283.0 7 1713.5 8 2144.0 9 3193.5 10 4243.0 11 5692.5 12 7142.0 13 7309.0 14 6923.0 15 6370.0 16 5547.5 17 4725.0 18 4029.5 19 3334.0 20 3207.5 21 3081.0 22 2958.5 23 2836.0 24 2569.0 25 2302.0 26 2556.5 27 2811.0 28 3333.5 29 3856.0 30 3939.5 31 4023.0 32 3765.5 33 3508.0 34 5272.5 35 7037.0 36 7840.0 37 8643.0 38 10330.5 39 14982.5 40 17947.0 41 22346.5 42 26746.0 43 32513.5 44 38281.0 45 50884.5 46 63488.0 47 76702.0 48 89916.0 49 93242.5 50 96569.0 51 78076.5 52 59584.0 53 49721.0 54 39858.0 55 34687.0 56 29516.0 57 25548.5 58 21581.0 59 23128.5 60 24676.0 61 17505.5 62 10335.0 63 9323.0 64 7335.5 65 6360.0 66 5060.5 67 3761.0 68 3140.0 69 2519.0 70 2129.0 71 1739.0 72 1506.0 73 1273.0 74 928.5 75 584.0 76 581.5 77 579.0 78 402.0 79 225.0 80 197.5 81 170.0 82 91.5 83 13.0 84 7.5 85 2.0 86 1.5 87 1.0 88 0.5 89 0.0 90 0.0 91 0.5 92 1.0 93 1.5 94 2.0 95 1.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 642704.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.624313100325793 #Duplication Level Percentage of deduplicated Percentage of total 1 64.46466973042222 12.650748626989007 2 12.652753709587028 4.96603200756489 3 6.098125527693613 3.5901457404164674 4 3.77762739218013 2.965333708820404 5 2.417483124463821 2.3720722874615947 6 1.6684940191676618 1.964582942290031 7 1.1842620131120816 1.6268229976693533 8 0.8833003184650727 1.386732960894086 9 0.6118541509013478 1.0806495686119832 >10 4.424155242635814 17.640931223736047 >50 0.8197575715399477 11.657676448566422 >100 0.9776779556023383 30.410842355027007 >500 0.009522837229892904 1.2999001471630431 >1k 0.008729267460735164 3.9814600649778797 >5k 0.0015871395383154844 2.4060689198117906 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 8326 1.2954641639074909 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 7124 1.1084418332544996 No Hit GCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 4405 0.6853854962782245 TruSeq Adapter, Index 23 (96% over 25bp) CTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCTT 4378 0.6811844955064851 Illumina Single End Adapter 1 (95% over 23bp) CCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 4186 0.6513107122407826 TruSeq Adapter, Index 23 (96% over 25bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 3509 0.5459745077049466 No Hit TCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 1644 0.25579426921257686 TruSeq Adapter, Index 23 (96% over 25bp) CGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1550 0.24116856282207672 Illumina Single End Adapter 1 (95% over 21bp) GGGGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCT 1256 0.19542433219646993 TruSeq Adapter, Index 23 (95% over 22bp) ACTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGCT 1231 0.19153451666708157 Illumina Single End Adapter 1 (95% over 22bp) AGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1211 0.1884226642435709 Illumina Single End Adapter 1 (95% over 21bp) CGTTTTTTTTCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCG 1127 0.1753528840648261 No Hit ACCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 1069 0.16632851203664517 Illumina Single End Adapter 1 (95% over 21bp) GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCG 986 0.1534143244790759 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA 834 0.12976424606039483 No Hit GGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 827 0.12867509771216612 TruSeq Adapter, Index 23 (95% over 24bp) GCCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 777 0.12089546665338942 TruSeq Adapter, Index 23 (95% over 24bp) GGGGTTGGGGATTTAGCTCCTGTCTCTTATACACATCTGACGCTTCTCTGCT 759 0.11809479947222984 No Hit TGCTGTCTCTTATACACATCTGACGCTTCTCTGCTCGTATGCCGTCTTCTGC 726 0.11296024297343722 Illumina Single End Adapter 1 (95% over 21bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.6981440912146183 0.0 2 0.0 0.0 0.0 2.528068908860066 0.0 3 0.0 0.0 0.0 3.8580746346685255 0.0 4 0.0 0.0 0.0 5.307419900918619 0.0 5 0.0 0.0 0.0 9.148379347257835 0.0 6 0.0 0.0 0.0 12.187103238816002 0.0 7 0.0 0.0 0.0 14.5928763474321 0.0 8 0.0 0.0 0.0 19.290217580721453 0.0 9 0.0 0.0 0.0 21.377025815927706 0.0 10 0.0 0.0 0.0 23.65910279070925 0.0 11 0.0 0.0 0.0 27.376366103213922 0.0 12 0.0 0.0 0.0 29.232119295974506 0.0 13 0.0 0.0 0.0 30.0023027707934 0.0 14 0.0 0.0 0.0 30.284547785605817 0.0 15 0.0 0.0 0.0 30.767662874355846 0.0 16 0.0 0.0 0.0 31.716311085663072 0.0 17 1.5559262117553337E-4 0.0 0.0 32.838289476959844 0.0 18 1.5559262117553337E-4 0.0 0.0 33.88698374368294 0.0 19 3.1118524235106674E-4 0.0 0.0 34.51215489556623 0.0 20 3.1118524235106674E-4 0.0 0.0 35.18089198137867 0.0 21 7.779631058776669E-4 0.0 0.0 35.83655928701237 0.0 22 7.779631058776669E-4 0.0 0.0 36.471065996166196 0.0 23 7.779631058776669E-4 0.0 0.0 37.07118673604023 0.0 24 9.335557270532003E-4 0.0 0.0 37.48568547885185 0.0 25 9.335557270532003E-4 0.0 0.0 37.916988224750426 0.0 26 9.335557270532003E-4 0.0 0.0 38.2955450720705 0.0 27 9.335557270532003E-4 0.0 0.0 38.77445916004879 0.0 28 9.335557270532003E-4 0.0 0.0 39.13854589359954 0.0 29 9.335557270532003E-4 0.0 0.0 39.57031541736165 0.0 30 9.335557270532003E-4 0.0 0.0 40.54276929970873 0.0 31 9.335557270532003E-4 0.0 0.0 40.99243197490602 0.0 32 9.335557270532003E-4 0.0 0.0 41.307973810650005 0.0 33 9.335557270532003E-4 0.0 0.0 41.70022280863353 0.0 34 9.335557270532003E-4 0.0 0.0 42.0781572854689 0.0 35 9.335557270532003E-4 0.0 0.0 42.48487639722174 0.0 36 9.335557270532003E-4 0.0 0.0 42.79435012073987 0.0 37 9.335557270532003E-4 0.0 0.0 43.154702631382406 0.0 38 9.335557270532003E-4 0.0 0.0 43.560954965271726 0.0 39 9.335557270532003E-4 0.0 0.0 44.628942717020585 0.0 40 9.335557270532003E-4 0.0 0.0 44.981982374467876 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TGATCGA 35 1.0186341E-7 46.000004 21 TTTAGTC 20 6.3093664E-4 46.000004 31 GTTGACA 20 6.3093664E-4 46.000004 39 TTGATCG 35 1.0186341E-7 46.000004 20 CTTAAAC 20 6.3093664E-4 46.000004 34 ACAACCG 20 6.3093664E-4 46.000004 18 ACAACCC 20 6.3093664E-4 46.000004 46 CTATGTA 20 6.3093664E-4 46.000004 17 CGTGGTA 20 6.3093664E-4 46.000004 39 AGACTTA 20 6.3093664E-4 46.000004 39 CTAGAGT 20 6.3093664E-4 46.000004 18 CGGGTGA 40 5.6043064E-9 46.000004 6 TTCTAAC 20 6.3093664E-4 46.000004 45 AACCGTC 20 6.3093664E-4 46.000004 20 AACCGAT 20 6.3093664E-4 46.000004 24 AATCCGA 20 6.3093664E-4 46.000004 28 GCCCATT 20 6.3093664E-4 46.000004 27 CCCCTCG 20 6.3093664E-4 46.000004 34 TACCCGG 20 6.3093664E-4 46.000004 44 TCGCAAG 40 5.6043064E-9 46.000004 1 >>END_MODULE