##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933104.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1193318 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.597587566767615 33.0 31.0 34.0 31.0 34.0 2 32.942640603761944 34.0 31.0 34.0 31.0 34.0 3 33.006353712924806 34.0 33.0 34.0 31.0 34.0 4 36.411295228933106 37.0 37.0 37.0 35.0 37.0 5 36.38412476808361 37.0 37.0 37.0 35.0 37.0 6 36.540182918551466 37.0 37.0 37.0 35.0 37.0 7 36.613595035020005 37.0 37.0 37.0 35.0 37.0 8 36.477407530934755 37.0 37.0 37.0 35.0 37.0 9 38.11695960339155 39.0 39.0 39.0 35.0 39.0 10 37.891406146559426 39.0 38.0 39.0 35.0 39.0 11 37.27440045319018 39.0 35.0 39.0 35.0 39.0 12 37.03903066910916 39.0 35.0 39.0 34.0 39.0 13 37.091403129760884 39.0 35.0 39.0 35.0 39.0 14 38.44373167923387 40.0 35.0 41.0 35.0 41.0 15 38.518623702986126 40.0 35.0 41.0 35.0 41.0 16 38.515994060258876 40.0 35.0 41.0 35.0 41.0 17 38.5327900861296 40.0 36.0 41.0 35.0 41.0 18 38.47872402829757 40.0 36.0 41.0 35.0 41.0 19 38.378511846800265 40.0 35.0 41.0 35.0 41.0 20 38.27453369512569 40.0 35.0 41.0 35.0 41.0 21 38.218003918486104 40.0 35.0 41.0 35.0 41.0 22 38.183857949012754 40.0 35.0 41.0 35.0 41.0 23 38.15577658260413 40.0 35.0 41.0 35.0 41.0 24 38.12197503096409 40.0 35.0 41.0 35.0 41.0 25 38.03928123098788 40.0 35.0 41.0 35.0 41.0 26 38.012740107833785 40.0 35.0 41.0 35.0 41.0 27 37.9932867852492 40.0 35.0 41.0 35.0 41.0 28 38.0273648767554 40.0 35.0 41.0 35.0 41.0 29 38.012051272167184 40.0 35.0 41.0 35.0 41.0 30 37.91615059858311 40.0 35.0 41.0 35.0 41.0 31 37.80514498230983 40.0 35.0 41.0 34.0 41.0 32 37.73667203545074 40.0 35.0 41.0 34.0 41.0 33 37.64135460958437 40.0 35.0 41.0 34.0 41.0 34 37.496312801784605 40.0 35.0 41.0 34.0 41.0 35 37.39847551113785 40.0 35.0 41.0 34.0 41.0 36 37.33546715963389 40.0 35.0 41.0 34.0 41.0 37 37.25504014856057 40.0 35.0 41.0 33.0 41.0 38 37.27554180863776 40.0 35.0 41.0 33.0 41.0 39 37.17728803219259 39.0 35.0 41.0 33.0 41.0 40 37.199945027226605 39.0 35.0 41.0 33.0 41.0 41 37.125513065251674 39.0 35.0 41.0 33.0 41.0 42 37.045380192035985 39.0 35.0 41.0 33.0 41.0 43 36.92874489448747 39.0 35.0 41.0 33.0 41.0 44 36.87921995645754 39.0 35.0 41.0 33.0 41.0 45 36.82776761936047 39.0 35.0 41.0 33.0 41.0 46 36.73690835133636 39.0 35.0 41.0 33.0 41.0 47 36.682945367454444 39.0 35.0 41.0 33.0 41.0 48 36.652350840262194 38.0 35.0 41.0 33.0 41.0 49 36.54142986194795 38.0 35.0 41.0 33.0 41.0 50 36.449395718492475 38.0 35.0 41.0 32.0 41.0 51 36.35124752999619 38.0 35.0 41.0 32.0 41.0 52 36.14113253969185 37.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 2.0 12 0.0 13 0.0 14 5.0 15 6.0 16 22.0 17 60.0 18 129.0 19 278.0 20 447.0 21 821.0 22 1276.0 23 2199.0 24 3611.0 25 5869.0 26 7962.0 27 9283.0 28 9559.0 29 10637.0 30 12365.0 31 15554.0 32 19585.0 33 27625.0 34 70676.0 35 210113.0 36 54788.0 37 71907.0 38 128438.0 39 525816.0 40 4285.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 32.406785115116 22.381963567129635 25.017807491381173 20.19344382637319 2 25.49077446246516 25.19445780588242 28.069466814378064 21.245300917274356 3 25.196636604827884 24.94666132581592 27.720942783063695 22.135759286292505 4 24.500845541590756 29.55473729550715 24.862609966496777 21.081807196405318 5 22.644173640219957 36.54834671060019 21.758659468808816 19.04882018037103 6 89.62347002224051 2.5217921794525853 5.835242575742593 2.0194952225643124 7 91.96475708905757 1.5500478497768408 4.22770795378935 2.2574871073762397 8 85.466070234422 3.8722285258413938 7.181488924159361 3.4802123155772393 9 48.610093872714565 29.972061093522427 11.268245346169252 10.149599687593751 10 37.338747928046004 20.65903640102638 28.05069562346332 13.951520047464298 11 35.81652166480352 21.653406719751146 26.007066012580047 16.523005602865286 12 19.48927276719198 38.29825746364339 26.60380552375813 15.608664245406507 13 15.03664572226347 40.517615589474055 28.267318518617834 16.17842016964464 14 14.344877057079506 26.34762904774754 43.062285157853985 16.245208737318972 15 16.238672340482587 21.59206514944047 43.15899031104869 19.010272199028254 16 16.593313768836136 22.084557511074166 28.191647155242777 33.130481564846924 17 20.322914763709253 24.983952307767083 32.716509765209274 21.976623163314386 18 24.887498554450698 27.292724990321105 27.86767651204457 19.952099943183626 19 27.291803190767254 25.259151374570738 26.17190053280014 21.277144901861867 20 20.044028498690206 28.864812229430882 29.42392555882003 21.667233713058884 21 20.62635441684446 24.58154490253227 28.22047434129042 26.571626339332855 22 17.15904729502111 29.60384407173947 26.41684781424566 26.820260818993763 23 17.7328256173124 25.26568777140712 38.3588448343191 18.64264177696138 24 17.457207550711544 25.449125882623076 34.95740448061623 22.13626208604915 25 15.799560553012693 35.773867485448136 27.469626704700673 20.956945256838498 26 17.05488394543617 32.176083826775425 30.01706167174215 20.751970556046253 27 17.087230729780327 28.369219269297872 36.71309743086084 17.830452570060956 28 15.62852483579398 24.79188280072872 35.86805863985962 23.711533723617677 29 19.754583438781616 28.727128896069615 31.5414667339301 19.97682093121867 30 28.620786747539213 25.983015424220536 25.628457795826424 19.767740032413826 31 26.531737558639023 27.123113872412887 27.79736834607372 18.547780222874373 32 25.005740297221696 27.540856670225374 27.292138390605018 20.161264641947913 33 19.61941410420357 26.271706284494158 30.17929839321958 23.929581218082692 34 20.564510046777137 24.50411374000895 31.856889781265345 23.074486431948568 35 26.860400999565915 22.82006975508624 31.069505362359408 19.25002388298844 36 20.173667035945154 28.538076187571125 30.673718153920415 20.614538622563305 37 20.118526662633094 29.2206268572166 29.50889871769302 21.151947762457283 38 19.777628427627842 28.195753353255377 30.252288157892533 21.77433006122425 39 23.27493593493101 25.155993624499086 28.084550807077406 23.4845196334925 40 18.96887501906449 22.637888643261896 31.104366145486782 27.288870192186828 41 23.292952926210784 25.391387710568345 25.372281319815844 25.943378043405023 42 22.71464940610969 25.064651668708592 28.23589353382753 23.984805391354193 43 20.869458099182282 28.402823053033643 29.876193939922135 20.851524907861947 44 18.697530750395117 32.852014299625075 25.805024310368236 22.645430639611572 45 22.51947930057202 28.694195512009372 27.778513355199536 21.007811832219073 46 22.695878215194945 26.057010788406775 28.314665495701902 22.932445500696378 47 22.185033662443708 22.669397428011646 32.8869588827119 22.25861002683275 48 20.072436684940644 22.077685914400018 32.46385288749521 25.386024513164134 49 20.006234716982398 28.466427222249223 30.860675863432885 20.666662197335498 50 18.66744656495586 28.81143165526708 29.556413294695965 22.964708485081093 51 21.421867431816164 22.978870678226592 31.075455159479702 24.523806730477542 52 23.608878773302674 23.078341230082845 30.521537427575886 22.791242569038598 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1868.0 1 1585.5 2 1303.0 3 4008.5 4 6714.0 5 4404.5 6 2095.0 7 2320.5 8 2546.0 9 2923.5 10 3301.0 11 3553.5 12 3806.0 13 3802.0 14 3716.0 15 3634.0 16 3534.0 17 3434.0 18 3521.5 19 3609.0 20 3395.5 21 3182.0 22 3713.0 23 4244.0 24 4180.0 25 4116.0 26 5831.5 27 7547.0 28 9094.0 29 10641.0 30 12771.0 31 14901.0 32 16421.5 33 17942.0 34 22351.5 35 26761.0 36 29379.5 37 31998.0 38 35649.0 39 42812.5 40 46325.0 41 63622.5 42 80920.0 43 100710.0 44 120500.0 45 127757.5 46 135015.0 47 134627.0 48 134239.0 49 129903.0 50 125567.0 51 111987.5 52 98408.0 53 87188.0 54 75968.0 55 65753.0 56 55538.0 57 47531.0 58 39524.0 59 35880.5 60 32237.0 61 26389.5 62 20542.0 63 17776.5 64 10950.5 65 6890.0 66 5599.0 67 4308.0 68 3387.0 69 2466.0 70 1970.0 71 1474.0 72 1069.0 73 664.0 74 524.0 75 384.0 76 368.5 77 353.0 78 231.5 79 110.0 80 110.5 81 111.0 82 61.0 83 11.0 84 8.5 85 6.0 86 6.0 87 6.0 88 3.0 89 0.0 90 0.0 91 0.5 92 1.0 93 0.5 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1193318.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 19.906401164380625 #Duplication Level Percentage of deduplicated Percentage of total 1 70.11311354891636 13.956997651884995 2 12.456483176025381 4.959275023986385 3 5.134204767410142 3.0661061928042543 4 2.5003040518583126 1.9908822195687161 5 1.4825288124514158 1.4755906639205343 6 0.9525701662529165 1.137734631999078 7 0.6166330998279191 0.8592462099487087 8 0.4777317583005605 0.7607936023756704 9 0.35153170915203574 0.6297958101942714 >10 3.467354596126763 16.064913320257833 >50 1.2949143373408551 18.66909740394352 >100 1.1420747567738252 33.867239367459426 >500 0.007177549303199641 1.022930852201343 >1k 0.003377670260329243 1.5393970494552456 >5k 0.0 0.0 >10k+ 0.0 0.0 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 4803 0.4024912051942567 No Hit CTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCTT 3202 0.2683274701295044 TruSeq Adapter, Index 10 (96% over 25bp) CCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT 3008 0.2520702779979855 RNA PCR Primer, Index 10 (95% over 24bp) GCTGTCTCTTATACACATCTGACGCGGTTTGTCTCGTATGCCGTCTTCTGCT 2266 0.18989070809289726 RNA PCR Primer, Index 35 (96% over 25bp) AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 1678 0.14061633194169534 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.2786348651407253 0.0 2 0.0 0.0 0.0 0.8669943803747199 0.0 3 0.0 0.0 0.0 1.4577002944730575 0.0 4 0.0 0.0 0.0 1.8054701261524588 0.0 5 0.0 0.0 0.0 3.4638713234862792 0.0 6 0.0 0.0 0.0 3.7701601752424754 0.0 7 0.0 0.0 0.0 4.683495933187968 0.0 8 8.379995944081963E-5 0.0 0.0 5.944852922691186 0.0 9 8.379995944081963E-5 0.0 0.0 6.81335570233584 0.0 10 8.379995944081963E-5 0.0 0.0 7.576186733125621 0.0 11 8.379995944081963E-5 0.0 0.0 8.370023748908505 0.0 12 8.379995944081963E-5 0.0 0.0 8.982266252583134 0.0 13 8.379995944081963E-5 0.0 0.0 9.213386540720915 0.0 14 8.379995944081963E-5 0.0 0.0 9.376712661671071 0.0 15 8.379995944081963E-5 0.0 0.0 9.958954779865886 0.0 16 8.379995944081963E-5 0.0 0.0 10.769886987374699 0.0 17 8.379995944081963E-5 0.0 0.0 11.732999921228037 0.0 18 8.379995944081963E-5 0.0 0.0 12.214179288337224 0.0 19 8.379995944081963E-5 0.0 0.0 12.689827858123317 0.0 20 8.379995944081963E-5 0.0 0.0 13.276259974290172 0.0 21 8.379995944081963E-5 0.0 0.0 13.869396087212294 0.0 22 8.379995944081963E-5 0.0 0.0 14.52739336874161 0.0 23 8.379995944081963E-5 0.0 0.0 15.000360339825596 0.0 24 8.379995944081963E-5 0.0 0.0 15.387097152644978 0.0 25 8.379995944081963E-5 0.0 0.0 15.772493166113307 0.0 26 8.379995944081963E-5 0.0 0.0 16.12462059568363 0.0 27 8.379995944081963E-5 0.0 0.0 16.53565939674085 0.0 28 8.379995944081963E-5 0.0 0.0 16.92599960781619 0.0 29 8.379995944081963E-5 0.0 0.0 17.418240569571566 0.0 30 8.379995944081963E-5 0.0 0.0 17.87369334913242 0.0 31 8.379995944081963E-5 0.0 0.0 18.267972158301475 0.0 32 8.379995944081963E-5 0.0 0.0 18.655211770877504 0.0 33 8.379995944081963E-5 0.0 0.0 19.054183377775246 0.0 34 1.6759991888163925E-4 0.0 0.0 19.556396534704078 0.0 35 1.6759991888163925E-4 0.0 0.0 19.969027534990673 0.0 36 1.6759991888163925E-4 0.0 0.0 20.384507733898257 0.0 37 1.6759991888163925E-4 0.0 0.0 20.788507338362447 0.0 38 1.6759991888163925E-4 0.0 0.0 21.177925749883936 0.0 39 1.6759991888163925E-4 0.0 0.0 21.61686993743495 0.0 40 1.6759991888163925E-4 0.0 0.0 22.036875334152338 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position GGTCGAG 35 1.0196163E-7 46.000004 43 CTAAGCG 55 1.8189894E-12 46.000004 29 ACGATAT 70 0.0 46.000004 22 GTTCGAC 35 1.0196163E-7 46.000004 20 TTCGCGG 55 1.8189894E-12 46.000004 1 TCGCCGT 20 6.311552E-4 46.0 24 TCGCCCA 20 6.311552E-4 46.0 37 AACCGTA 25 3.417235E-5 46.0 9 TCGTTTG 20 6.311552E-4 46.0 10 CGGAAAG 30 1.8614646E-6 46.0 28 GTACCGT 25 3.417235E-5 46.0 40 AGTCCGA 30 1.8614646E-6 46.0 10 GTACCGC 20 6.311552E-4 46.0 27 ACCGGAT 65 0.0 46.0 17 CTCGTTG 25 3.417235E-5 46.0 15 GTATTAC 25 3.417235E-5 46.0 40 GTCGAAC 25 3.417235E-5 46.0 14 GGTCGCA 30 1.8614646E-6 46.0 43 ATAGGCG 20 6.311552E-4 46.0 2 CGCGGCC 20 6.311552E-4 46.0 35 >>END_MODULE