SRR2933100.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933100.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1484810
Sequences flagged as poor quality	0
Sequence length	52
%GC	48

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	13821	0.9308261663108411	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	10375	0.6987426000633078	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	10255	0.6906607579420936	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	9735	0.6556394420834989	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4290	0.2889258558334063	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3475	0.23403667809349343	No Hit
CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT	1779	0.11981330944699996	Illumina Single End Adapter 2 (95% over 21bp)
GGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1656	0.11152942127275543	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGACGGT	425	0.0	46.000004	27
TGATCGA	20	6.3120533E-4	46.0	16
CGCGATA	20	6.3120533E-4	46.0	10
TCGGCGA	20	6.3120533E-4	46.0	41
ATCGTAC	20	6.3120533E-4	46.0	45
CGTAGAT	30	1.8617739E-6	46.0	29
CCGCGAT	20	6.3120533E-4	46.0	9
TCGAATC	20	6.3120533E-4	46.0	40
TCACGAC	440	0.0	45.477272	24
CACGACG	420	0.0	45.45238	25
GACGGTC	450	0.0	43.955555	28
CTAGCGG	330	0.0	43.909092	1
TAGTAGG	430	0.0	43.32558	1
CGGTCTA	445	0.0	42.898876	30
GTTACGG	120	0.0	42.166668	1
TACGGGT	165	0.0	41.81818	3
CGCACTT	5960	0.0	41.793625	34
CACTTAC	5970	0.0	41.646564	36
CCCGCAC	6035	0.0	41.617233	32
CCGCACT	5995	0.0	41.549625	33