##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933100.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1484810 Sequences flagged as poor quality 0 Sequence length 52 %GC 48 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.511050572127075 33.0 31.0 34.0 31.0 34.0 2 32.86866804506974 34.0 31.0 34.0 31.0 34.0 3 32.962127140846306 34.0 31.0 34.0 31.0 34.0 4 36.38457917174588 37.0 37.0 37.0 35.0 37.0 5 36.360773432291 37.0 37.0 37.0 35.0 37.0 6 36.49115105636412 37.0 37.0 37.0 35.0 37.0 7 36.525678032879625 37.0 37.0 37.0 35.0 37.0 8 36.37507425192449 37.0 37.0 37.0 35.0 37.0 9 38.015296906674926 39.0 38.0 39.0 35.0 39.0 10 37.918015773061875 39.0 38.0 39.0 35.0 39.0 11 37.48726099635643 39.0 37.0 39.0 35.0 39.0 12 37.307686505344115 39.0 37.0 39.0 35.0 39.0 13 37.07319791757868 39.0 37.0 39.0 33.0 39.0 14 38.58617466207798 41.0 38.0 41.0 34.0 41.0 15 38.71671729042773 41.0 38.0 41.0 35.0 41.0 16 38.736028852176375 41.0 37.0 41.0 35.0 41.0 17 38.74729022568544 41.0 37.0 41.0 35.0 41.0 18 38.6728833992228 40.0 37.0 41.0 35.0 41.0 19 38.54598029377496 40.0 37.0 41.0 35.0 41.0 20 38.458329348536175 40.0 36.0 41.0 35.0 41.0 21 38.45729352577097 40.0 36.0 41.0 35.0 41.0 22 38.40848054633253 40.0 35.0 41.0 35.0 41.0 23 38.361114890120625 40.0 35.0 41.0 35.0 41.0 24 38.2961995137425 40.0 35.0 41.0 35.0 41.0 25 38.220502959974674 40.0 35.0 41.0 34.0 41.0 26 38.12996208269072 40.0 35.0 41.0 34.0 41.0 27 38.062587805847215 40.0 35.0 41.0 34.0 41.0 28 38.041949475017006 40.0 35.0 41.0 34.0 41.0 29 38.022370538991524 40.0 35.0 41.0 34.0 41.0 30 37.919048901879705 40.0 35.0 41.0 34.0 41.0 31 37.85458004727877 40.0 35.0 41.0 34.0 41.0 32 37.783042948256 40.0 35.0 41.0 34.0 41.0 33 37.612303931142705 40.0 35.0 41.0 34.0 41.0 34 37.504042941521135 40.0 35.0 41.0 33.0 41.0 35 37.38696870306639 40.0 35.0 41.0 33.0 41.0 36 37.29079545531078 40.0 35.0 41.0 33.0 41.0 37 37.18494352812818 40.0 35.0 41.0 33.0 41.0 38 37.182990416282216 40.0 35.0 41.0 33.0 41.0 39 37.07048578606017 40.0 35.0 41.0 33.0 41.0 40 36.9842181827978 39.0 35.0 41.0 33.0 41.0 41 36.97412530896209 39.0 35.0 41.0 33.0 41.0 42 36.930577649665615 39.0 35.0 41.0 33.0 41.0 43 36.85806534169355 39.0 35.0 41.0 33.0 41.0 44 36.77157750823338 39.0 35.0 41.0 33.0 41.0 45 36.72815511748978 39.0 35.0 41.0 33.0 41.0 46 36.62607808406463 39.0 35.0 41.0 32.0 41.0 47 36.5290299768994 38.0 35.0 41.0 32.0 41.0 48 36.46389504381032 38.0 35.0 41.0 32.0 41.0 49 36.36741468605411 38.0 35.0 41.0 32.0 41.0 50 36.25884793340562 38.0 35.0 41.0 32.0 41.0 51 36.17050060277072 38.0 35.0 41.0 31.0 41.0 52 35.90260235316303 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 1.0 10 1.0 11 3.0 12 4.0 13 6.0 14 14.0 15 22.0 16 60.0 17 119.0 18 258.0 19 482.0 20 962.0 21 1473.0 22 2275.0 23 3314.0 24 5120.0 25 8237.0 26 11316.0 27 13226.0 28 13925.0 29 15058.0 30 17352.0 31 21146.0 32 27059.0 33 37988.0 34 97899.0 35 161695.0 36 87001.0 37 117992.0 38 191861.0 39 640465.0 40 8475.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.5218445457668 21.63313824664435 23.16929438783413 18.675722819754718 2 28.76980893178252 24.230103514927837 26.36869363756979 20.631393915719855 3 30.00787979606818 24.123557896296496 24.8830490096376 20.985513297997723 4 23.49822536216755 26.69647968426937 23.35261750661701 26.452677446946073 5 22.100740162040935 39.35096072898216 21.57616125968979 16.972137849287115 6 87.75991541005247 3.108949966662401 6.887345855698709 2.2437887675864254 7 89.30334520915135 2.4679925377657748 5.631696984799402 2.596965268283484 8 82.50449552467992 4.5807881143041875 8.752432971221907 4.162283389793981 9 40.313642822987454 30.498717007563258 14.899280042564369 14.288360126884921 10 34.29751954795563 22.379563715222822 23.911274843245938 19.41164189357561 11 32.292751261104115 20.227167112290463 29.41029491988874 18.069786706716684 12 24.79293646998606 25.45813942524633 31.54295835830847 18.205965746459142 13 18.58628376694661 31.69685010203326 31.22837265374021 18.48849347727992 14 16.755207737016857 28.070729588297493 37.213515533974046 17.960547140711604 15 21.83100868124541 20.917289080757804 37.861611923411076 19.390090314585702 16 22.44758588640971 22.010762319758083 27.78712427852722 27.75452751530499 17 24.241081350475817 26.699443026380482 28.550791010297615 20.508684612846086 18 25.74491012318074 29.9125814077222 25.117893871943213 19.224614597153845 19 24.222829857018745 26.643139526269355 25.30539260915538 23.82863800755652 20 24.688276614516337 25.947023524895442 29.389955617217016 19.974744243371205 21 20.29094631636371 23.255298657740724 29.614630828186773 26.8391241977088 22 18.847259918777485 30.179416895090956 27.76429307453479 23.20903011159677 23 19.45770839366653 30.803739198954748 29.49030515688876 20.24824725048996 24 26.11795448575912 24.748351640950695 27.363366356638224 21.770327516651964 25 19.194644432621008 27.363433705322564 25.72255035997872 27.719371502077706 26 17.18004323785535 26.990658737481567 32.59629178144005 23.233006243223038 27 19.432115893616018 25.620853846620108 32.36858587967484 22.578444380089035 28 19.36793259743671 30.489018797017803 27.747994692923672 22.39505391262182 29 22.500252557566288 24.969524720334586 30.330547342757658 22.199675379341464 30 26.960419178211353 25.540708912251397 26.009119011860104 21.489752897677146 31 25.71500730733225 27.961759417029786 25.302227220991234 21.021006054646723 32 24.388911712609694 26.492682565446085 23.075881762649768 26.042523959294456 33 18.95656683346691 25.49316074110492 27.864373219469158 27.685899205959014 34 20.518719566813264 26.910513803112856 26.297438729534417 26.27332790053946 35 27.970514745994436 26.40775587448899 23.64652716509183 21.97520221442474 36 21.56673244388171 30.594958277490047 23.635145237437786 24.203164041190455 37 23.10827647981897 30.056168802742437 24.26317171894047 22.572382998498124 38 20.5085499154774 26.137754998956098 24.1415399950162 29.212155090550308 39 24.461715640384966 24.98083929930429 28.338103865140994 22.219341195169754 40 19.49400933452765 23.861840908937847 30.727769883015338 25.91637987351917 41 20.218613829378842 29.065267609997235 25.819667162801974 24.896451397821945 42 20.199756197762678 24.63372418019814 27.770623850863075 27.39589577117611 43 21.921457964318666 26.75998949360524 29.803409190401464 21.515143351674627 44 22.033189431644455 27.5873007320802 24.793946700251208 25.585563136024135 45 23.348643934240744 25.341289457910438 26.525818118143064 24.784248489705753 46 24.208619284622273 26.118425926549527 27.270761915665975 22.40219287316222 47 20.46679373118446 30.350280507270288 26.645362032852688 22.53756372869256 48 21.118459600891697 27.540762791198876 26.75035863174413 24.590418976165303 49 19.443161077848345 27.078144678443707 29.6569931506388 23.821701093069148 50 19.29048161044174 27.87009785763835 29.216263360295258 23.623157171624655 51 20.40894121133344 25.517002175362503 26.807605013436064 27.266451599867995 52 21.110445107454826 24.167671284541456 27.02749846781743 27.694385140186284 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1550.0 1 1919.5 2 2289.0 3 8161.5 4 14034.0 5 8777.5 6 3521.0 7 3903.5 8 4286.0 9 5177.0 10 6068.0 11 6736.0 12 7404.0 13 7555.0 14 7448.5 15 7191.0 16 6708.5 17 6226.0 18 5993.5 19 5761.0 20 5512.0 21 5263.0 22 5124.5 23 4986.0 24 5573.0 25 6160.0 26 6498.5 27 6837.0 28 9791.5 29 12746.0 30 14500.0 31 16254.0 32 18168.0 33 20082.0 34 23491.5 35 26901.0 36 30585.0 37 34269.0 38 38283.5 39 45372.5 40 48447.0 41 55752.5 42 63058.0 43 73860.0 44 84662.0 45 88371.5 46 92081.0 47 100089.5 48 108098.0 49 131905.5 50 155713.0 51 150964.5 52 146216.0 53 129930.0 54 113644.0 55 104048.0 56 94452.0 57 88228.0 58 82004.0 59 76288.0 60 70572.0 61 64287.0 62 58002.0 63 51306.5 64 36620.5 65 28630.0 66 22852.0 67 17074.0 68 14799.0 69 12524.0 70 10481.0 71 8438.0 72 7460.0 73 6482.0 74 4921.5 75 3361.0 76 3093.0 77 2825.0 78 1985.5 79 1146.0 80 823.0 81 500.0 82 363.0 83 226.0 84 195.5 85 165.0 86 94.5 87 24.0 88 18.0 89 9.0 90 6.0 91 4.5 92 3.0 93 2.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.5 100 1.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1484810.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 21.367958568827465 #Duplication Level Percentage of deduplicated Percentage of total 1 73.78267605350328 15.765851650084766 2 10.18198664820159 4.351365376942521 3 3.7395903931664574 2.3972223775669823 4 1.8568581615786814 1.5870907305920963 5 1.1324760162212364 1.209935029740308 6 0.8048802914380497 1.0319189232188415 7 0.5889028212958853 0.8808555760561257 8 0.4679786607305373 0.7999798906868388 9 0.40854331585160086 0.7856762982019561 >10 4.810747235446005 24.33388945176774 >50 1.6075392490325204 24.713748252000713 >100 0.6076929379025504 17.028816728499965 >500 0.005380614554297782 0.7617959078139277 >1k 0.003481574123369153 1.363509170582084 >5k 3.1650673848810485E-4 0.6583880648587168 >10k+ 9.495202154643145E-4 2.3299565713865076 >>END_MODULE >>Overrepresented sequences warn #Sequence Count Percentage Possible Source GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13821 0.9308261663108411 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 10375 0.6987426000633078 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 10255 0.6906607579420936 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 9735 0.6556394420834989 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4290 0.2889258558334063 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 3475 0.23403667809349343 No Hit CTGTCTCTTATACACATCTGACGCCCTACGCATCGTATGCCGTCTTCTGCTT 1779 0.11981330944699996 Illumina Single End Adapter 2 (95% over 21bp) GGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1656 0.11152942127275543 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1244603686666981 0.0 2 0.0 0.0 0.0 0.3613256915026165 0.0 3 0.0 0.0 0.0 0.6715337315885535 0.0 4 0.0 0.0 0.0 0.9145277846997258 0.0 5 0.0 0.0 0.0 2.2216310504374297 0.0 6 0.0 0.0 0.0 2.5696217024400427 0.0 7 0.0 0.0 0.0 3.4192253554326815 0.0 8 0.0 0.0 0.0 4.539974811592056 0.0 9 0.0 0.0 0.0 5.462382392359965 0.0 10 0.0 0.0 0.0 6.154726867410645 0.0 11 0.0 0.0 0.0 6.806258039749194 0.0 12 0.0 0.0 0.0 7.28389490911295 0.0 13 0.0 0.0 0.0 7.497188192428661 0.0 14 0.0 0.0 0.0 7.615991271610509 0.0 15 0.0 0.0 0.0 7.9694371670449415 0.0 16 0.0 0.0 0.0 8.43636559559809 0.0 17 0.0 0.0 0.0 9.039473063893697 0.0 18 0.0 0.0 0.0 9.331362261838215 0.0 19 0.0 0.0 0.0 9.641031512449404 0.0 20 6.734868434345135E-5 0.0 0.0 10.045393013247486 0.0 21 6.734868434345135E-5 0.0 0.0 10.469083586452138 0.0 22 1.346973686869027E-4 0.0 0.0 10.86718165960628 0.0 23 1.346973686869027E-4 0.0 0.0 11.150248179901805 0.0 24 1.346973686869027E-4 0.0 0.0 11.376607107980146 0.0 25 2.0204605303035406E-4 0.0 0.0 11.612462200550912 0.0 26 2.693947373738054E-4 0.0 0.0 11.906843299816138 0.0 27 2.693947373738054E-4 0.0 0.0 12.20290811618995 0.0 28 2.693947373738054E-4 0.0 0.0 12.52800021551579 0.0 29 2.693947373738054E-4 0.0 0.0 12.805544143695153 0.0 30 2.693947373738054E-4 0.0 0.0 13.125450394326547 0.0 31 2.693947373738054E-4 0.0 0.0 13.381846835622067 0.0 32 2.693947373738054E-4 0.0 0.0 13.69959792835447 0.0 33 2.693947373738054E-4 0.0 0.0 14.02879829742526 0.0 34 2.693947373738054E-4 0.0 0.0 14.473232265407695 0.0 35 2.693947373738054E-4 0.0 0.0 14.769364430465851 0.0 36 3.3674342171725674E-4 0.0 0.0 15.089540075834618 0.0 37 3.3674342171725674E-4 0.0 0.0 15.548790754372613 0.0 38 3.3674342171725674E-4 0.0 0.0 16.706581986920884 0.0 39 3.3674342171725674E-4 0.0 0.0 17.116196685097755 0.0 40 3.3674342171725674E-4 0.0 0.0 17.45233396865592 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGACGGT 425 0.0 46.000004 27 TGATCGA 20 6.3120533E-4 46.0 16 CGCGATA 20 6.3120533E-4 46.0 10 TCGGCGA 20 6.3120533E-4 46.0 41 ATCGTAC 20 6.3120533E-4 46.0 45 CGTAGAT 30 1.8617739E-6 46.0 29 CCGCGAT 20 6.3120533E-4 46.0 9 TCGAATC 20 6.3120533E-4 46.0 40 TCACGAC 440 0.0 45.477272 24 CACGACG 420 0.0 45.45238 25 GACGGTC 450 0.0 43.955555 28 CTAGCGG 330 0.0 43.909092 1 TAGTAGG 430 0.0 43.32558 1 CGGTCTA 445 0.0 42.898876 30 GTTACGG 120 0.0 42.166668 1 TACGGGT 165 0.0 41.81818 3 CGCACTT 5960 0.0 41.793625 34 CACTTAC 5970 0.0 41.646564 36 CCCGCAC 6035 0.0 41.617233 32 CCGCACT 5995 0.0 41.549625 33 >>END_MODULE