Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933099.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1090800 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 48 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC | 11730 | 1.0753575357535754 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 8050 | 0.737990465713238 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG | 6004 | 0.5504217088375505 | No Hit |
GGGGCTGGTGAGATGGCTCAGTGGGTAAGAGCACCCGACTGCTCTTCCGAAG | 1551 | 0.14218921892189218 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA | 1478 | 0.13549688302163548 | No Hit |
GCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT | 1450 | 0.13292995966263293 | Illumina Single End Adapter 1 (95% over 21bp) |
CTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCTT | 1449 | 0.13283828382838284 | Illumina Single End Adapter 1 (95% over 22bp) |
CCTGTCTCTTATACACATCTGACGCTACAACGTTCGTATGCCGTCTTCTGCT | 1160 | 0.10634396773010633 | Illumina Single End Adapter 1 (95% over 21bp) |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1113 | 0.10203520352035204 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
GTTAGCG | 35 | 1.0195072E-7 | 46.000004 | 1 |
TATCTCG | 35 | 1.0195072E-7 | 46.000004 | 41 |
GATACCG | 20 | 6.3113135E-4 | 46.0 | 16 |
ACACGAT | 20 | 6.3113135E-4 | 46.0 | 34 |
ATTAGGC | 20 | 6.3113135E-4 | 46.0 | 33 |
CGAAATT | 20 | 6.3113135E-4 | 46.0 | 31 |
CAACGTA | 20 | 6.3113135E-4 | 46.0 | 32 |
CGCATTG | 40 | 5.6115823E-9 | 46.0 | 12 |
CGGTTAT | 20 | 6.3113135E-4 | 46.0 | 10 |
ATTACGA | 30 | 1.8613155E-6 | 46.0 | 26 |
CACGATT | 20 | 6.3113135E-4 | 46.0 | 35 |
CTGCGAT | 25 | 3.4170414E-5 | 46.0 | 33 |
TAACCGA | 30 | 1.8613155E-6 | 46.0 | 26 |
CGGATTA | 25 | 3.4170414E-5 | 46.0 | 37 |
TATTCGC | 30 | 1.8613155E-6 | 46.0 | 22 |
GTCGTGA | 25 | 3.4170414E-5 | 46.0 | 22 |
GCGATCA | 25 | 3.4170414E-5 | 46.0 | 35 |
GCGATAA | 60 | 0.0 | 46.0 | 9 |
CGTCGTT | 25 | 3.4170414E-5 | 46.0 | 44 |
AATTACG | 20 | 6.3113135E-4 | 46.0 | 1 |