##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933098.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1301958 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.445370741606105 33.0 31.0 34.0 31.0 34.0 2 32.83522970787076 34.0 31.0 34.0 31.0 34.0 3 32.89762265756653 34.0 31.0 34.0 31.0 34.0 4 36.34596891758413 37.0 37.0 37.0 35.0 37.0 5 36.279946818560965 37.0 37.0 37.0 35.0 37.0 6 36.36975616724963 37.0 37.0 37.0 35.0 37.0 7 36.51987852142696 37.0 37.0 37.0 35.0 37.0 8 36.43984598581521 37.0 37.0 37.0 35.0 37.0 9 38.28271188471518 39.0 39.0 39.0 37.0 39.0 10 37.962284497656604 39.0 38.0 39.0 35.0 39.0 11 37.689141277982856 39.0 37.0 39.0 35.0 39.0 12 37.3712201161635 39.0 37.0 39.0 35.0 39.0 13 37.27232061249288 39.0 37.0 39.0 35.0 39.0 14 38.403171991723234 40.0 38.0 41.0 33.0 41.0 15 38.570569096698975 41.0 38.0 41.0 34.0 41.0 16 38.72047485402755 41.0 38.0 41.0 35.0 41.0 17 38.72967561165567 41.0 38.0 41.0 35.0 41.0 18 38.66848546573699 40.0 37.0 41.0 35.0 41.0 19 38.63659734031359 40.0 37.0 41.0 35.0 41.0 20 38.519262526133716 40.0 36.0 41.0 35.0 41.0 21 38.454484706879946 40.0 36.0 41.0 35.0 41.0 22 38.40503610715553 40.0 36.0 41.0 35.0 41.0 23 38.36141565242504 40.0 36.0 41.0 35.0 41.0 24 38.3009505682979 40.0 35.0 41.0 34.0 41.0 25 38.19697870438217 40.0 35.0 41.0 34.0 41.0 26 38.08636223288309 40.0 35.0 41.0 34.0 41.0 27 37.95852861613047 40.0 35.0 41.0 34.0 41.0 28 37.94536766931038 40.0 35.0 41.0 34.0 41.0 29 37.91387817425754 40.0 35.0 41.0 34.0 41.0 30 37.87738774983525 40.0 35.0 41.0 34.0 41.0 31 37.78583180102584 40.0 35.0 41.0 34.0 41.0 32 37.69197700693878 40.0 35.0 41.0 34.0 41.0 33 37.588570445436794 40.0 35.0 41.0 34.0 41.0 34 37.47541548959337 40.0 35.0 41.0 33.0 41.0 35 37.40672433365746 40.0 35.0 41.0 33.0 41.0 36 37.31871995870834 40.0 35.0 41.0 33.0 41.0 37 37.21843254544309 40.0 35.0 41.0 33.0 41.0 38 37.21712989205489 40.0 35.0 41.0 33.0 41.0 39 37.189831008373545 40.0 35.0 41.0 33.0 41.0 40 37.118586006614656 40.0 35.0 41.0 33.0 41.0 41 37.021029864250615 40.0 35.0 41.0 33.0 41.0 42 37.00189944683316 40.0 35.0 41.0 33.0 41.0 43 36.93169057680816 40.0 35.0 41.0 33.0 41.0 44 36.86595036091794 39.0 35.0 41.0 32.0 41.0 45 36.80064564294701 39.0 35.0 41.0 32.0 41.0 46 36.70314480190605 39.0 35.0 41.0 32.0 41.0 47 36.611182541986764 39.0 35.0 41.0 32.0 41.0 48 36.53506564727894 39.0 35.0 41.0 31.0 41.0 49 36.48946125758281 39.0 35.0 41.0 31.0 41.0 50 36.38742570804895 39.0 35.0 41.0 31.0 41.0 51 36.31941429754262 39.0 35.0 41.0 31.0 41.0 52 36.048678221570896 38.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 11 1.0 12 2.0 13 3.0 14 11.0 15 20.0 16 48.0 17 110.0 18 199.0 19 406.0 20 744.0 21 1221.0 22 1927.0 23 3141.0 24 4989.0 25 7184.0 26 9721.0 27 11389.0 28 12604.0 29 14208.0 30 16634.0 31 19599.0 32 24856.0 33 34064.0 34 78987.0 35 142737.0 36 76507.0 37 87978.0 38 149916.0 39 598430.0 40 4322.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.58647821204678 23.17609323803072 27.10571308751895 14.131715462403548 2 33.14776667142873 25.20227226991961 27.375614267126895 14.274346791524763 3 30.22079053241349 23.938329807873988 30.69261834867177 15.148261311040756 4 27.21693019283264 28.344309109817672 29.057772984996443 15.380987712353239 5 24.170288135254747 32.43292026317285 27.057094007640796 16.3396975939316 6 27.230064257065127 39.481381119821066 22.605107077186823 10.68344754592698 7 86.72115383138319 1.889077835076093 8.383296542592003 3.0064717909487095 8 83.80001505424907 2.4193560775385996 9.286013834547658 4.49461503366468 9 78.22333746557109 3.949359349533549 12.127887381927835 5.699415802967531 10 44.210565932234374 18.64706849222479 19.295322890600158 17.847042684940682 11 28.348072672083124 25.076999411655372 29.1818937323631 17.393034183898408 12 30.34445043542111 19.889965728541167 29.884681379890903 19.880902456146817 13 26.951791071601388 22.36807946185668 32.40288857244243 18.277240894099503 14 18.206654899774033 24.286497721124643 34.15716943250089 23.349677946600426 15 14.468208651891997 29.506251353730306 36.638662691116 19.386877303261702 16 22.227061087992087 27.09311667503867 32.307801019694956 18.37202121727429 17 21.086164069808703 28.575038518907675 28.688713460802884 21.650083950480735 18 18.195441020370858 26.94464798403635 34.336745117738054 20.523165877854737 19 19.562766233626583 28.559830655059532 29.80103812872612 22.076364982587766 20 17.454710520615873 32.68661508282141 29.786060687057493 20.072613709505223 21 20.424775607200846 29.785446227912114 32.02599469414528 17.76378347074176 22 19.97890868983485 25.196818945004367 31.817309006895766 23.00696335826501 23 19.490413669258146 25.79660787828793 32.30173323563433 22.41124521681959 24 18.372328446846982 27.442359891793743 32.98470457572364 21.200607085635635 25 20.590986806026002 27.425846302261668 30.10396648739821 21.879200404314116 26 19.087942929034575 29.30570725015707 28.22233896945984 23.384010851348506 27 20.912579361238993 27.627696131518835 31.50109296920484 19.958631538037324 28 18.534699276013512 28.52104292150745 29.503793517148786 23.440464285330247 29 20.106485769894267 26.496860881841044 29.804187231846193 23.5924661164185 30 23.098671385712905 26.113207952944716 29.56370328382329 21.22441737751909 31 21.729502795021038 26.58849210189576 30.019631969694878 21.66237313338833 32 24.577751356034526 25.237603670778935 28.26104989561875 21.923595077567786 33 23.242531633124877 24.33934120762728 30.83824516612671 21.57988199312113 34 19.504008577849667 23.381322592587473 33.50661081233035 23.608058017232505 35 21.583799170172924 25.410343498023746 29.470612723298295 23.53524460850504 36 21.83726356764197 25.00464684728693 30.29337351896144 22.864716066109658 37 19.39002640638177 25.90198762172052 31.01943380662049 23.688552165277223 38 20.795678508830544 24.74680442840706 30.679253862259763 23.77826320050263 39 20.053719090784803 25.875105034110163 29.208008246041732 24.863167629063305 40 22.42330397754766 24.64150149236765 29.380517651107024 23.554676878977663 41 18.635240153676232 24.420142585244687 29.25217249711588 27.6924447639632 42 19.099924882369475 25.153038730896082 30.75782782547517 24.98920856125927 43 20.653738446247882 25.982558577158404 31.540802391474994 21.82290058511872 44 21.901935392693158 25.984478761987713 28.810299564194853 23.303286281124276 45 20.342130852147307 25.75866502606075 28.564669520829394 25.33453460096255 46 22.19879596730463 25.54598535436627 28.971364667677452 23.283854010651652 47 19.846415936612395 24.498332511494226 31.87683473660441 23.77841681528897 48 18.78639710343959 24.40800701712344 32.196660721774435 24.608935157662536 49 23.261810288811162 23.638857781894654 29.985299064946798 23.114032864347394 50 20.107407458612336 23.602988729283126 31.811394837621492 24.47820897448305 51 18.96635682564261 23.5356286454709 30.004270491060385 27.493744037826108 52 19.31245093927761 24.609011965055707 31.46092270257566 24.61761439309102 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 685.0 1 2677.5 2 4670.0 3 11389.0 4 18108.0 5 10705.5 6 3303.0 7 3751.5 8 4200.0 9 5536.5 10 6873.0 11 8243.5 12 9614.0 13 9918.5 14 9968.0 15 9713.0 16 8612.0 17 7511.0 18 7143.5 19 6776.0 20 6309.0 21 5842.0 22 6256.5 23 6671.0 24 7089.5 25 7508.0 26 9550.5 27 11593.0 28 13570.0 29 15547.0 30 16901.5 31 18256.0 32 20946.0 33 23636.0 34 27291.0 35 30946.0 36 32192.0 37 33438.0 38 35604.0 39 42843.5 40 47917.0 41 54256.5 42 60596.0 43 65682.5 44 70769.0 45 75272.5 46 79776.0 47 90775.5 48 101775.0 49 119084.5 50 136394.0 51 134373.5 52 132353.0 53 120061.0 54 107769.0 55 95113.5 56 82458.0 57 72755.5 58 63053.0 59 58109.5 60 53166.0 61 44032.0 62 34898.0 63 28545.0 64 17743.0 65 13294.0 66 11038.0 67 8782.0 68 7205.0 69 5628.0 70 4175.0 71 2722.0 72 2543.5 73 2365.0 74 1895.5 75 1426.0 76 1100.5 77 775.0 78 660.0 79 545.0 80 355.5 81 166.0 82 137.0 83 108.0 84 94.0 85 80.0 86 67.0 87 54.0 88 31.0 89 5.5 90 3.0 91 2.0 92 1.0 93 1.0 94 1.0 95 1.0 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1301958.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 20.18183086652333 #Duplication Level Percentage of deduplicated Percentage of total 1 69.96486117220346 14.120189947771955 2 12.1760305802672 4.914691795931372 3 5.124280665726199 3.102520971248452 4 2.6879603662088503 2.1699184594698053 5 1.5666576238727956 1.5809009595375048 6 1.0333293062163258 1.2512686372487867 7 0.6642710064192796 0.9384343570762393 8 0.524744094320546 0.8472237247827381 9 0.38935224946151137 0.7072057121519361 >10 3.3703660710418673 14.986605620972195 >50 1.3713670235591866 20.329435081317516 >100 1.1141879901293785 30.67385052781834 >500 0.008394567048919947 1.152271604357664 >1k 0.003434141065467251 1.594913934227867 >5k 3.8157122949636113E-4 0.5129506888074852 >10k+ 3.8157122949636113E-4 1.117617977280143 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 14513 1.1147056971115812 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 6661 0.5116140459216043 No Hit CTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCTT 3654 0.2806542146520855 Illumina Single End Adapter 1 (95% over 22bp) GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 3624 0.2783499928569124 No Hit CCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT 3322 0.2551541601188364 TruSeq Adapter, Index 13 (95% over 22bp) GCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGCT 2674 0.20538296934309708 TruSeq Adapter, Index 13 (95% over 22bp) GATACTGAAGCTACGAATATACTGACTATGAAGACCTATGCTTTGATTCATA 2237 0.17181813852674202 No Hit CGCTGTCTCTTATACACATCTGACGCGTTGTCCCTCGTATGCCGTCTTCTGC 1702 0.13072618317948814 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.292328938414296 0.0 2 0.0 0.0 0.0 0.9064808542211039 0.0 3 0.0 0.0 0.0 1.3764652930432473 0.0 4 0.0 0.0 0.0 1.9114287864892723 0.0 5 0.0 0.0 0.0 3.3841337431775833 0.0 6 0.0 0.0 0.0 4.8435510208470625 0.0 7 0.0 0.0 0.0 6.015862262837972 0.0 8 0.0 0.0 0.0 8.16885030085456 0.0 9 0.0 0.0 0.0 9.285399375402278 0.0 10 0.0 0.0 0.0 10.41024364841262 0.0 11 0.0 0.0 0.0 12.257077417243874 0.0 12 0.0 0.0 0.0 13.26448318609356 0.0 13 0.0 0.0 0.0 13.68300667149017 0.0 14 0.0 0.0 0.0 13.858434757496017 0.0 15 0.0 0.0 0.0 14.15445045078259 0.0 16 0.0 0.0 0.0 14.743025504662977 0.0 17 7.68073931724372E-5 0.0 0.0 15.380526867994206 0.0 18 7.68073931724372E-5 0.0 0.0 15.993065828544392 0.0 19 7.68073931724372E-5 0.0 0.0 16.397533560990446 0.0 20 7.68073931724372E-5 0.0 0.0 16.874507472591283 0.0 21 7.68073931724372E-5 0.0 0.0 17.409470966037308 0.0 22 7.68073931724372E-5 0.0 0.0 17.96202335251982 0.0 23 7.68073931724372E-5 0.0 0.0 18.492685631948188 0.0 24 1.536147863448744E-4 0.0 0.0 18.874111146442512 0.0 25 1.536147863448744E-4 0.0 0.0 19.2768123088456 0.0 26 1.536147863448744E-4 0.0 0.0 19.62720763649826 0.0 27 1.536147863448744E-4 0.0 0.0 20.01393286112148 0.0 28 1.536147863448744E-4 0.0 0.0 20.34136277821558 0.0 29 1.536147863448744E-4 0.0 0.0 20.727243121513904 0.0 30 1.536147863448744E-4 0.0 0.0 21.37664963078686 0.0 31 1.536147863448744E-4 0.0 0.0 21.760072137503666 0.0 32 1.536147863448744E-4 0.0 0.0 22.05946735608983 0.0 33 1.536147863448744E-4 0.0 0.0 22.394424397714825 0.0 34 1.536147863448744E-4 0.0 0.0 22.75695529348873 0.0 35 1.536147863448744E-4 0.0 0.0 23.116413893535736 0.0 36 1.536147863448744E-4 0.0 0.0 23.42786787284997 0.0 37 1.536147863448744E-4 0.0 0.0 23.784561406742768 0.0 38 1.536147863448744E-4 0.0 0.0 24.16982729089571 0.0 39 1.536147863448744E-4 0.0 0.0 24.980068481471754 0.0 40 1.536147863448744E-4 0.0 0.0 25.31932673711441 0.0 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACGCGAG 45 3.110472E-10 46.0 1 TCGTTGC 20 6.311765E-4 46.0 22 GTCGCAT 25 3.417408E-5 46.0 42 GATCGCG 20 6.311765E-4 46.0 32 CGTGCCA 25 3.417408E-5 46.0 21 GACGTAC 20 6.311765E-4 46.0 28 TTGTACG 30 1.8615956E-6 46.0 1 ATGTCGT 40 5.6115823E-9 46.0 41 AATATCG 40 5.6115823E-9 46.0 43 ATCGTAG 30 1.8615956E-6 46.0 1 CGTTAGC 20 6.311765E-4 46.0 11 ACTAGTC 20 6.311765E-4 46.0 15 ATATCGT 40 5.6115823E-9 46.0 44 CCCGTAA 20 6.311765E-4 46.0 30 CTTATCC 20 6.311765E-4 46.0 39 ACGGCCG 25 3.417408E-5 46.0 26 ATATACG 25 3.417408E-5 46.0 1 AACGATT 20 6.311765E-4 46.0 17 AATTCGG 20 6.311765E-4 46.0 13 TCCCGTA 20 6.311765E-4 46.0 29 >>END_MODULE