SRR2933090.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933090.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	2022195
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19433	0.9609854638153096	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	14269	0.7056193888324321	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	10701	0.529177453212969	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	9972	0.49312751737592075	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3823	0.18905199548015894	No Hit
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3561	0.17609577711348312	No Hit
CTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCTT	3430	0.1696176679301452	Illumina Single End Adapter 2 (95% over 21bp)
CCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	3013	0.14899651121677188	No Hit
GCTGTCTCTTATACACATCTGACGCGAACGGAATCGTATGCCGTCTTCTGCT	2602	0.12867206179423843	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	2447	0.12100712344754092	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTACC	20	6.312598E-4	46.0	36
TCTACGT	40	5.6152203E-9	46.0	14
GCTCGAT	25	3.4180823E-5	46.0	32
GTGCGAC	20	6.312598E-4	46.0	40
TGTCGAT	20	6.312598E-4	46.0	23
GCGTAAT	30	1.8621104E-6	46.0	21
TATACGG	195	0.0	44.82051	1
CACGACG	565	0.0	44.37168	25
GACGGTC	565	0.0	43.964603	28
CGTTTTT	6030	0.0	43.48259	1
CTAGCGG	425	0.0	43.29412	1
GTTACGG	155	0.0	43.03226	1
ACGGTCT	580	0.0	42.827587	29
TCACGAC	600	0.0	42.55	24
CGACGGT	580	0.0	42.431038	27
CGGTCTA	580	0.0	42.431038	30
ACGGGCC	235	0.0	42.085106	4
GCGTAGG	345	0.0	42.0	1
TATGCGG	385	0.0	41.818184	1
ATAGCGG	255	0.0	41.490196	1