##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933088.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1858785 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.44468079955455 33.0 31.0 34.0 31.0 34.0 2 32.74652958787595 34.0 31.0 34.0 31.0 34.0 3 32.78544909712527 34.0 31.0 34.0 31.0 34.0 4 36.247856529937565 37.0 37.0 37.0 35.0 37.0 5 36.22628975379078 37.0 37.0 37.0 35.0 37.0 6 36.406156171907995 37.0 37.0 37.0 35.0 37.0 7 36.506909621069674 37.0 37.0 37.0 35.0 37.0 8 36.33623200101141 37.0 37.0 37.0 35.0 37.0 9 37.955086790564806 39.0 38.0 39.0 35.0 39.0 10 37.82949345943722 39.0 38.0 39.0 35.0 39.0 11 37.389160661399785 39.0 37.0 39.0 35.0 39.0 12 37.198167082260724 39.0 37.0 39.0 34.0 39.0 13 36.837574006676405 39.0 37.0 39.0 33.0 39.0 14 38.39307235640486 41.0 37.0 41.0 33.0 41.0 15 38.57294953423877 41.0 37.0 41.0 35.0 41.0 16 38.62820067947611 41.0 37.0 41.0 35.0 41.0 17 38.64502618646051 40.0 37.0 41.0 35.0 41.0 18 38.5433888265722 40.0 37.0 41.0 35.0 41.0 19 38.39625508060373 40.0 36.0 41.0 34.0 41.0 20 38.30262886778191 40.0 35.0 41.0 35.0 41.0 21 38.28226610393348 40.0 35.0 41.0 34.0 41.0 22 38.268082107398115 40.0 35.0 41.0 35.0 41.0 23 38.195346422528694 40.0 35.0 41.0 34.0 41.0 24 38.122655928469406 40.0 35.0 41.0 34.0 41.0 25 38.04124844992831 40.0 35.0 41.0 34.0 41.0 26 37.942276271865765 40.0 35.0 41.0 34.0 41.0 27 37.85232665423919 40.0 35.0 41.0 34.0 41.0 28 37.82332329989752 40.0 35.0 41.0 34.0 41.0 29 37.78801206164242 40.0 35.0 41.0 34.0 41.0 30 37.603918150835085 40.0 35.0 41.0 34.0 41.0 31 37.59364746326229 40.0 35.0 41.0 34.0 41.0 32 37.4988107823121 40.0 35.0 41.0 34.0 41.0 33 37.32460074726232 40.0 35.0 41.0 33.0 41.0 34 37.17994173613409 39.0 35.0 41.0 33.0 41.0 35 37.06678502355033 39.0 35.0 41.0 33.0 41.0 36 37.00730477166536 39.0 35.0 41.0 33.0 41.0 37 36.91173535400813 39.0 35.0 41.0 33.0 41.0 38 36.91465069924709 39.0 35.0 41.0 33.0 41.0 39 36.854574359057125 39.0 35.0 41.0 33.0 41.0 40 36.77588962682613 39.0 35.0 41.0 33.0 41.0 41 36.77084762358207 39.0 35.0 41.0 33.0 41.0 42 36.7568196429388 39.0 35.0 41.0 33.0 41.0 43 36.6923285909882 39.0 35.0 41.0 33.0 41.0 44 36.601282020244405 39.0 35.0 41.0 32.0 41.0 45 36.53874224291675 38.0 35.0 41.0 32.0 41.0 46 36.440043899644124 38.0 35.0 41.0 32.0 41.0 47 36.31315025675374 38.0 35.0 41.0 32.0 41.0 48 36.30538496921376 38.0 35.0 41.0 32.0 41.0 49 36.23229744160836 38.0 35.0 41.0 31.0 41.0 50 36.11702967260872 38.0 35.0 41.0 31.0 41.0 51 36.033152839085744 37.0 35.0 40.0 31.0 41.0 52 35.790699838873245 37.0 35.0 40.0 31.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 8 1.0 9 0.0 10 0.0 11 1.0 12 4.0 13 7.0 14 11.0 15 28.0 16 69.0 17 125.0 18 288.0 19 597.0 20 970.0 21 1601.0 22 2541.0 23 4184.0 24 6899.0 25 11277.0 26 15014.0 27 16882.0 28 17942.0 29 20274.0 30 24125.0 31 30022.0 32 38209.0 33 52265.0 34 130306.0 35 216805.0 36 144770.0 37 147414.0 38 216484.0 39 746549.0 40 13121.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 33.602433847916785 22.97920415755453 25.334075753785402 18.084286240743282 2 29.625319765330577 23.59046366309175 26.220999201091033 20.563217370486637 3 28.663992877067546 23.357300602275142 27.536535963008095 20.442170557649217 4 23.16567004790764 27.20271575249424 26.12044964856075 23.51116455103737 5 21.09835188039499 37.68267981504047 22.75793058368773 18.46103772087681 6 83.16507826348932 2.5917467593078274 11.511713296588901 2.7314616806139496 7 86.24795229141617 1.619821550098586 7.713640899835108 4.41858525865014 8 76.69020354694061 3.715652966857383 13.746721648818985 5.847421837383022 9 39.695446218901054 28.08232259244614 17.26364264828907 14.958588540363731 10 32.53388638277154 20.338016500025553 28.75259914406454 18.375497973138366 11 29.674061281966445 19.64885664560452 31.23820129815982 19.43888077426921 12 22.841694978171226 26.437215708110408 34.67587698415901 16.045212329559362 13 15.878167727843726 33.038839887345766 35.220372447593455 15.862619937217055 14 13.917532151378452 31.165035224622535 37.82664482444177 17.09078779955724 15 18.45942376337231 21.96553124756225 41.145748432443774 18.42929655662166 16 18.99757099395573 26.803584061631657 27.601148061771536 26.59769688264108 17 20.8622298974868 29.277996110362416 28.987107169468228 20.872666822682557 18 22.505346234233652 34.6353128522126 26.433288411516127 16.42605250203762 19 18.352956366658866 30.25573156658785 25.692643312701573 25.698668754051706 20 19.011074438410034 30.775587278786947 30.59525442695094 19.618083855852074 21 15.499156707203898 25.743160182592394 32.194471119575425 26.56321199062829 22 12.740419144763917 32.81885747948257 28.649144468026154 25.79157890772736 23 13.835489311566427 35.41593029855524 31.55787248121757 19.190707908660766 24 24.284250195692348 26.709974526370722 27.555742057311633 21.4500332206253 25 14.584365593653919 31.217596440685718 25.594514696428046 28.603523269232323 26 14.5412729282838 29.270464308674754 33.08612884222759 23.102133920813863 27 19.17526771520106 27.641443200800524 32.45700820697391 20.726280877024507 28 15.407699115282295 33.09161629774288 27.49371229055539 24.006972296419434 29 23.737495191751602 26.789004645507685 29.500722245983262 19.97277791675745 30 25.78603765362858 25.768499315413024 29.30919928878273 19.136263742175668 31 25.311856938806805 29.02772509999812 23.695962685302497 21.964455275892586 32 23.508205628945788 26.00849479633201 27.399941359544005 23.083358215178194 33 19.650578200275987 24.940969504272953 30.487657259984346 24.920795035466718 34 16.048009855900496 26.111734278036458 31.779361249418304 26.06089461664474 35 27.546219708035085 28.42679492248969 27.0630546297716 16.963930739703624 36 19.45136204563734 29.415720484079657 30.314748612669028 20.818168857613976 37 20.187219070521873 30.872693721974297 30.055816030363918 18.884271177139905 38 16.538383944350745 27.758455119876697 28.216550058236965 27.486610877535593 39 24.50294143755195 24.74508886181027 32.40315582490713 18.348813875730652 40 17.4915872465078 23.10433966273668 36.017613656232434 23.38645943452309 41 17.922621497375975 30.913257853920705 28.432605169505887 22.731515479197434 42 18.24401423510519 23.54968433681141 32.630508638707546 25.575792789375857 43 22.457250300599586 25.448935729522244 31.6634253020118 20.430388667866374 44 20.072897080619867 28.335444927735054 26.633096350573087 24.95856164107199 45 22.582547201532183 25.561589963336267 28.643388019593445 23.212474815538105 46 24.114784657719962 25.76677776074156 30.04914500601199 20.069292575526486 47 16.724096654535085 31.14878805241058 31.17504176115043 20.952073531903906 48 19.568858151964857 25.58956522674758 29.289186215726943 25.552390405560622 49 18.403634632300133 24.723300435499535 33.457070075344916 23.41599485685542 50 17.119247250219903 26.188504856667123 33.532603286555464 23.15964460655751 51 17.268161729301667 24.079707981288852 29.549732755536546 29.10239753387293 52 17.98814817205863 22.779181024163634 33.67947341946487 25.55319738431287 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 3105.0 1 2867.0 2 2629.0 3 19132.0 4 35635.0 5 20032.5 6 4430.0 7 5743.0 8 7056.0 9 10158.0 10 13260.0 11 16611.0 12 19962.0 13 20649.0 14 19793.5 15 18251.0 16 16100.0 17 13949.0 18 12441.0 19 10933.0 20 9891.5 21 8850.0 22 8423.0 23 7996.0 24 8073.0 25 8150.0 26 8666.0 27 9182.0 28 10185.5 29 11189.0 30 11948.0 31 12707.0 32 15532.5 33 18358.0 34 22316.0 35 26274.0 36 29683.5 37 33093.0 38 35632.5 39 45111.0 40 52050.0 41 70956.0 42 89862.0 43 120577.0 44 151292.0 45 187288.0 46 223284.0 47 229164.5 48 235045.0 49 231416.5 50 227788.0 51 192567.5 52 157347.0 53 126596.5 54 95846.0 55 86541.5 56 77237.0 57 76119.5 58 75002.0 59 67252.0 60 59502.0 61 47289.5 62 35077.0 63 29377.0 64 18489.5 65 13302.0 66 10363.5 67 7425.0 68 5561.5 69 3698.0 70 3178.0 71 2658.0 72 2453.5 73 2249.0 74 1598.0 75 947.0 76 698.0 77 449.0 78 328.0 79 207.0 80 202.0 81 197.0 82 134.5 83 72.0 84 54.0 85 36.0 86 22.5 87 9.0 88 7.5 89 4.0 90 2.0 91 1.5 92 1.0 93 1.0 94 1.0 95 0.5 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1858785.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.862304961662296 #Duplication Level Percentage of deduplicated Percentage of total 1 68.14877097636001 16.261867558003832 2 12.757078727368212 6.088266060247902 3 5.694208971293376 4.076308529653077 4 3.0393406299736037 2.9010269197920375 5 1.9526669322029993 2.3297566912390764 6 1.265018494200289 1.8111754254450072 7 0.8693628373593107 1.4521500803182728 8 0.6535039347316206 1.2475288147369747 9 0.48234514105886717 1.0358880167450437 >10 3.8279898300052135 19.331645212631493 >50 0.7806345616001149 13.240878367186525 >100 0.503690430773048 18.685172015672006 >500 0.01428104985375268 2.2542785882030807 >1k 0.009067333240477891 3.6343244099385377 >5k 0.0011334166550597364 1.659863053571679 >10k+ 9.067333240477891E-4 3.9898702566154154 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 32712 1.7598592629056078 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 16791 0.903332015268038 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 12336 0.6636593258499504 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 11922 0.6413867122878655 No Hit CTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCTT 8182 0.44018001006033514 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 6485 0.3488838138891803 No Hit GCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 5590 0.3007340816716296 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5415 0.29131932956205264 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5014 0.2697460975852506 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCG 4219 0.22697622371602955 No Hit ACCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 3411 0.18350696826152568 No Hit CGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 3328 0.17904168583241203 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 3027 0.16284831220393967 No Hit GCCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 3002 0.16150334761685725 No Hit AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 2817 0.15155060967244732 No Hit TCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGCT 2591 0.13939212980522223 No Hit AGCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCCGTCTTCTGC 2493 0.13411986862385913 No Hit CGTTTTTTTTTCTGTCTCTTATACACATCTGACGCGTCTGTATTCGTATGCC 1910 0.10275529445309706 No Hit GGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1872 0.10071094828073178 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.4558891964374578 0.0 2 0.0 0.0 0.0 1.3668068119766406 0.0 3 0.0 0.0 0.0 2.558068846047284 0.0 4 0.0 0.0 0.0 3.362680460623472 0.0 5 0.0 0.0 0.0 7.2675430455916095 0.0 6 0.0 0.0 0.0 8.13730474476607 0.0 7 0.0 0.0 0.0 10.308023789733616 0.0 8 0.0 0.0 0.0 13.255163991532102 0.0 9 0.0 0.0 0.0 15.208321564893197 0.0 10 0.0 0.0 0.0 16.895929330180735 0.0 11 0.0 0.0 0.0 18.674779493055947 0.0 12 0.0 0.0 0.0 19.869484636469522 0.0 13 0.0 0.0 0.0 20.404081160543043 0.0 14 0.0 0.0 0.0 20.731122749538006 0.0 15 0.0 0.0 0.0 21.63257181438413 0.0 16 0.0 0.0 0.0 22.893556812649123 0.0 17 0.0 0.0 0.0 24.27553482516805 0.0 18 0.0 0.0 0.0 25.027154835013196 0.0 19 0.0 0.0 0.0 25.729979529638985 0.0 20 0.0 0.0 0.0 26.602861546655475 0.0 21 0.0 0.0 0.0 27.464392062556993 0.0 22 0.0 0.0 0.0 28.30720067140632 0.0 23 0.0 0.0 0.0 28.903073782067317 0.0 24 5.3798583483296885E-5 0.0 0.0 29.365257412772323 0.0 25 5.3798583483296885E-5 0.0 0.0 29.84250464685265 0.0 26 5.3798583483296885E-5 0.0 0.0 30.446232350702207 0.0 27 5.3798583483296885E-5 0.0 0.0 30.989490446716538 0.0 28 5.3798583483296885E-5 0.0 0.0 31.616082548546498 0.0 29 5.3798583483296885E-5 0.0 0.0 32.12867545197535 0.0 30 5.3798583483296885E-5 0.0 0.0 32.7185769198697 0.0 31 5.3798583483296885E-5 0.0 0.0 33.14934217782046 0.0 32 5.3798583483296885E-5 0.0 0.0 33.64794744954365 0.0 33 5.3798583483296885E-5 0.0 0.0 34.22407648006628 0.0 34 5.3798583483296885E-5 0.0 0.0 34.89467582318557 0.0 35 5.3798583483296885E-5 0.0 0.0 35.34152685759784 0.0 36 5.3798583483296885E-5 0.0 0.0 35.82275518685593 0.0 37 5.3798583483296885E-5 0.0 0.0 36.465702058064814 0.0 38 5.3798583483296885E-5 0.0 0.0 37.8861460577743 0.0 39 5.3798583483296885E-5 0.0 0.0 38.44651210333632 0.0 40 5.3798583483296885E-5 0.0 0.0 38.939414725210284 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TTAGGCG 20 6.312464E-4 46.000004 1 TATGCGA 20 6.312464E-4 46.000004 39 CGGATTA 40 5.6152203E-9 46.000004 5 ACGTACT 20 6.312464E-4 46.000004 46 TAAGCGA 20 6.312464E-4 46.000004 38 CGGGTAG 75 0.0 46.0 5 CTGTCGG 60 0.0 46.0 1 CGCGGAC 55 1.8189894E-12 46.0 3 CGCGGAA 30 1.8620285E-6 46.0 3 GAGTACG 25 3.4179757E-5 46.0 43 GCACGAA 50 1.6370905E-11 46.0 33 TCTAGCG 25 3.4179757E-5 46.0 9 TCGCTAA 25 3.4179757E-5 46.0 20 TTACGAC 30 1.8620285E-6 46.0 26 ACCGTAG 25 3.4179757E-5 46.0 1 AGTACGG 130 0.0 46.0 1 ATCGCAC 25 3.4179757E-5 46.0 28 CGACGGT 990 0.0 45.30303 27 ACGTAGG 285 0.0 45.192986 1 CGTTTTT 7385 0.0 45.19025 1 >>END_MODULE