SRR2933085.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933085.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	858535
Sequences flagged as poor quality	0
Sequence length	52
%GC	46

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	18171	2.116512431059887	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	13406	1.5614972016283553	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	5183	0.6037028193375925	No Hit
GGGGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT	4432	0.5162282259896219	No Hit
CTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCTT	1752	0.20406855864932705	Illumina Single End Adapter 2 (95% over 22bp)
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCG	1641	0.1911395575020238	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA	1587	0.18484977316009246	No Hit
CCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGCT	1466	0.17075599713465378	Illumina Single End Adapter 2 (95% over 21bp)
CGCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCTGC	1410	0.1642332578170954	No Hit
CGTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTCT	1264	0.14722754459631815	No Hit
GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCAGTTGTGGTCG	1199	0.13965650788843786	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCAGTTGTGGTCGTATGCCGTCTTC	1073	0.12498034442393147	No Hit
GGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG	1002	0.11671044278916992	No Hit
GGGGTTGGGGATTTAGCTCCTGTCTCTTATACACATCTGACGCAGTTGTGGT	867	0.10098598193434163	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
TTACGCA	20	6.310556E-4	46.000004	26
ATTAGCG	25	3.4164288E-5	46.0	1
GCGATTA	30	1.8608498E-6	46.0	9
CATACGA	175	0.0	44.68571	18
CGTTTTT	6200	0.0	44.14516	1
CGTAAGG	110	0.0	43.909092	2
TACGAAA	180	0.0	43.444443	20
GGGCGAT	620	0.0	42.661293	7
ATACGAA	185	0.0	42.270267	19
TACGAAT	60	1.8189894E-12	42.166668	12
GCAAGGC	1620	0.0	41.882713	46
CGACGCG	55	4.7293724E-11	41.81818	15
ACGCGCA	55	4.7293724E-11	41.81818	17
ATCGTAG	50	8.712959E-10	41.399998	1
AACGACG	50	8.712959E-10	41.399998	13
AGGGCGA	370	0.0	41.027023	6
AACACGT	440	0.0	40.772728	41
CACGACC	460	0.0	40.5	27
CGGGTAT	40	2.909419E-7	40.250004	6
GGCCGAT	40	2.909419E-7	40.250004	8