Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933083.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1697029 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 46 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC | 14727 | 0.8678107445423737 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 12787 | 0.7534933109569725 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG | 7983 | 0.4704103465527107 | No Hit |
GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCCT | 2427 | 0.1430146450060665 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
CACGATT | 35 | 1.0199619E-7 | 46.000004 | 42 |
TCGCGCG | 35 | 1.0199619E-7 | 46.000004 | 1 |
TAGTACG | 70 | 0.0 | 46.000004 | 1 |
GTCGCAA | 30 | 1.8619303E-6 | 46.0 | 23 |
GTCGATA | 25 | 3.417849E-5 | 46.0 | 36 |
CGAAACG | 25 | 3.417849E-5 | 46.0 | 43 |
CGACCGG | 25 | 3.417849E-5 | 46.0 | 33 |
CGATTTA | 25 | 3.417849E-5 | 46.0 | 12 |
CGACATA | 25 | 3.417849E-5 | 46.0 | 46 |
CCGTCGA | 25 | 3.417849E-5 | 46.0 | 43 |
ACTACGT | 20 | 6.31231E-4 | 46.0 | 18 |
TATAGCG | 50 | 1.6370905E-11 | 46.0 | 1 |
CGCAATA | 20 | 6.31231E-4 | 46.0 | 31 |
CGCGTCA | 20 | 6.31231E-4 | 46.0 | 15 |
TTCGCTA | 30 | 1.8619303E-6 | 46.0 | 17 |
CGATAAC | 20 | 6.31231E-4 | 46.0 | 12 |
TCGAACG | 20 | 6.31231E-4 | 46.0 | 1 |
TCGCGAG | 45 | 3.110472E-10 | 46.0 | 1 |
ATTCTCG | 30 | 1.8619303E-6 | 46.0 | 10 |
CCCGATA | 40 | 5.6134013E-9 | 46.0 | 40 |