SRR2933081.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933081.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1701223
Sequences flagged as poor quality	0
Sequence length	52
%GC	43

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	52331	3.076081148679509	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	11440	0.6724574027038195	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	5601	0.32923373361399416	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTC	4085	0.24012137150743904	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTT	3393	0.1994447523928374	No Hit
CGTTCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT	3075	0.18075231759739904	No Hit
GGGGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCT	2884	0.16952510047183703	No Hit
CGCTGTCTCTTATACACATCTGACGCTTTCCGAATCGTATGCCGTCTTCTGC	2085	0.12255888851726082	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
CGTTTTT	15125	0.0	44.692234	1
AGGGATC	2680	0.0	41.794777	6
TAGTGCG	100	0.0	41.4	1
TATAGCG	45	1.589251E-8	40.88889	1
TATCGAG	80	0.0	40.250004	1
ACGGGAT	600	0.0	40.25	5
CGACCAA	385	0.0	40.02597	29
TACGGGA	460	0.0	40.0	4
TAGGGAT	2120	0.0	39.816036	5
TGCGACG	35	5.3746335E-6	39.428574	1
AATCGCG	35	5.3746335E-6	39.428574	1
GCGGGAT	920	0.0	39.25	5
CATACGA	900	0.0	39.1	18
TTGCGAG	190	0.0	38.736843	1
TAACGGG	375	0.0	38.64	3
ATAGGGA	1555	0.0	38.456593	4
TGCGGGA	815	0.0	38.380367	4
TCGATAC	30	1.00176825E-4	38.333332	25
CCGTATA	30	1.00176825E-4	38.333332	34
CGTAAGG	180	0.0	38.333332	2