##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933079.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1153198 Sequences flagged as poor quality 0 Sequence length 52 %GC 46 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.522265907502444 33.0 31.0 34.0 31.0 34.0 2 32.85203408261201 34.0 31.0 34.0 31.0 34.0 3 32.921245961231286 34.0 31.0 34.0 31.0 34.0 4 36.343356474777096 37.0 37.0 37.0 35.0 37.0 5 36.31844748256587 37.0 37.0 37.0 35.0 37.0 6 36.474999956642314 37.0 37.0 37.0 35.0 37.0 7 36.547933659267535 37.0 37.0 37.0 35.0 37.0 8 36.39578545921862 37.0 37.0 37.0 35.0 37.0 9 38.02255206824847 39.0 39.0 39.0 35.0 39.0 10 37.91595805750617 39.0 38.0 39.0 35.0 39.0 11 37.39827072194021 39.0 35.0 39.0 35.0 39.0 12 37.17726444201256 39.0 35.0 39.0 34.0 39.0 13 36.91312940188936 39.0 35.0 39.0 33.0 39.0 14 38.410860927611736 40.0 36.0 41.0 33.0 41.0 15 38.55654883203058 40.0 36.0 41.0 35.0 41.0 16 38.60690098317895 40.0 36.0 41.0 35.0 41.0 17 38.634218061425706 40.0 36.0 41.0 35.0 41.0 18 38.568924850719476 40.0 36.0 41.0 35.0 41.0 19 38.4418686123285 40.0 36.0 41.0 35.0 41.0 20 38.344480306070594 40.0 35.0 41.0 35.0 41.0 21 38.34837642798548 40.0 35.0 41.0 35.0 41.0 22 38.32712769186211 40.0 35.0 41.0 35.0 41.0 23 38.26657607800222 40.0 35.0 41.0 35.0 41.0 24 38.21328427555372 40.0 35.0 41.0 35.0 41.0 25 38.15915133394265 40.0 35.0 41.0 35.0 41.0 26 38.07590196999995 40.0 35.0 41.0 34.0 41.0 27 38.04601724942291 40.0 35.0 41.0 34.0 41.0 28 38.022141904512495 40.0 35.0 41.0 34.0 41.0 29 37.98423601150886 40.0 35.0 41.0 34.0 41.0 30 37.85128659605723 40.0 35.0 41.0 34.0 41.0 31 37.79667151694679 40.0 35.0 41.0 34.0 41.0 32 37.719989975702354 40.0 35.0 41.0 34.0 41.0 33 37.557853031309456 40.0 35.0 41.0 34.0 41.0 34 37.477374223680584 40.0 35.0 41.0 34.0 41.0 35 37.352791975012096 40.0 35.0 41.0 33.0 41.0 36 37.29085638372595 40.0 35.0 41.0 33.0 41.0 37 37.19654127044966 40.0 35.0 41.0 33.0 41.0 38 37.229859052825276 40.0 35.0 41.0 33.0 41.0 39 37.14458315050841 40.0 35.0 41.0 33.0 41.0 40 37.09651681671318 39.0 35.0 41.0 33.0 41.0 41 37.101247140560424 39.0 35.0 41.0 33.0 41.0 42 37.08529844831504 39.0 35.0 41.0 33.0 41.0 43 37.00895596419696 39.0 35.0 41.0 33.0 41.0 44 36.91541001631983 39.0 35.0 41.0 33.0 41.0 45 36.87041947696753 39.0 35.0 41.0 33.0 41.0 46 36.792461485365045 39.0 35.0 41.0 33.0 41.0 47 36.681770173031865 38.0 35.0 41.0 33.0 41.0 48 36.659299617238325 38.0 35.0 41.0 33.0 41.0 49 36.57341063720194 38.0 35.0 41.0 33.0 41.0 50 36.49377123442809 38.0 35.0 41.0 32.0 41.0 51 36.39361323901013 38.0 35.0 41.0 32.0 41.0 52 36.14064627236606 37.0 35.0 40.0 32.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 2.0 11 1.0 12 1.0 13 7.0 14 7.0 15 22.0 16 31.0 17 68.0 18 166.0 19 290.0 20 607.0 21 1012.0 22 1572.0 23 2345.0 24 3741.0 25 5897.0 26 7807.0 27 8648.0 28 9223.0 29 10307.0 30 12547.0 31 15971.0 32 20864.0 33 29598.0 34 78618.0 35 152503.0 36 72829.0 37 83363.0 38 132975.0 39 493489.0 40 8686.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 34.552609352426906 22.48234908489262 25.266346282251618 17.698695280428858 2 28.54843660845752 24.89997381195597 26.503948151141433 20.047641428445072 3 29.207473478101765 24.199226845693453 26.076441339648525 20.516858336556254 4 23.771459888067792 26.748919092818408 24.942464346972507 24.537156672141297 5 21.14589168555617 39.13144143503544 21.108950934705057 18.613715944703337 6 87.33409180383595 2.911989094674115 7.706135459825633 2.047783641664311 7 89.8262917556222 1.7523443502330043 5.482493032419411 2.9388708617253934 8 82.40258828059015 3.713325898934962 9.359277418101662 4.5248084023732265 9 40.849793357255216 29.25195846680275 14.45658074328953 15.441667432652503 10 35.656582824458596 21.73442895322399 23.355486221793655 19.253502000523763 11 32.808242816931696 20.764517454938353 29.01574577826184 17.411493949868106 12 23.078517305787905 29.31647470772582 30.82670972374215 16.778298262744126 13 16.836484281103505 36.8936644010829 30.433889063283146 15.835962254530445 14 14.916172244488804 30.489126758804648 38.00075962670764 16.59394136999891 15 17.936121984255955 20.854528016871342 41.939025215097494 19.270324783775205 16 18.92094852748617 23.61493863152728 25.720041137775123 31.744071703211418 17 21.687429218573044 29.18657507210384 28.973428674000473 20.15256703532264 18 24.52267520408464 33.21727925299905 24.609130435536656 17.650915107379653 19 21.881845095118095 28.04323281864866 24.107395260831186 25.967526825402054 20 22.055796142553145 28.771295128850376 29.294795863329625 19.87811286526685 21 17.536884385855682 24.597337144185126 28.623618840823518 29.24215962913567 22 13.972188644101013 33.55382163340554 27.03161122374475 25.442378498748695 23 15.464820438467635 33.778761322860426 32.0095074739984 18.746910764673544 24 24.32947334282578 26.848121484775383 27.523460845405562 21.298944326993283 25 15.477914460482936 31.578011755136586 24.46318845506149 28.48088532931899 26 14.522657861009126 30.8195990627802 31.455656357364475 23.2020867188462 27 17.31723433443346 28.48834285179128 33.36530240253625 20.829120411239007 28 15.628539071347678 34.04870629328181 26.749959677349423 23.572794958021085 29 20.068019542177492 30.120499688691794 30.56500271419132 19.246478054939395 30 27.849077088236367 30.12873764956235 23.93656596698919 18.085619295212098 31 27.00594347197966 31.641834273038977 22.078862432990693 19.273359821990674 32 24.9481875618931 30.50265435770787 20.148231266443403 24.400926813955625 33 18.234856460035484 29.5950045005281 25.646072920695318 26.524066118741104 34 20.839439541171593 28.912641194313554 25.139828546355442 25.108090718159414 35 30.339976309358846 28.85618948350587 21.996222678152407 18.807611528982882 36 21.08033486010208 32.835991737758825 23.774494926283257 22.309178475855838 37 22.396240714950945 33.92955936448034 23.952174734954447 19.722025185614267 38 19.543651653922396 27.709638761080058 23.4952714104603 29.251438174537242 39 24.824618148834805 25.180237912309945 29.437269228701403 20.55787471015385 40 17.337872594298638 24.33883860360493 32.147471639735755 26.17581716236067 41 19.053536339813284 32.315005749229535 24.93578726289848 23.6956706480587 42 19.829378823064207 25.09742472671649 27.995972937864966 27.077223512354344 43 22.298946061300835 27.455996281644605 30.116337350567722 20.12872030648683 44 21.79036037176617 31.88741222235904 22.308224606702403 24.01400279917239 45 24.21917138253795 28.51028184232023 25.126214232074627 22.14433254306719 46 25.964231641053836 27.440127367546594 25.964578502564173 20.631062488835394 47 19.587269488847536 31.533786912568353 27.551036335477512 21.327907263106596 48 21.388347881283178 27.622056229719437 27.066904382421754 23.922691506575628 49 19.128111564536184 27.56170232692044 30.599081857582135 22.711104250961238 50 18.066108335255525 28.062830493982823 30.861742736286395 23.009318434475258 51 18.76832946293698 24.89364358939228 27.96839744779301 28.36962949987773 52 20.040097190595198 24.579647207157834 28.758547968345415 26.621707633901547 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1317.0 1 1374.5 2 1432.0 3 6309.0 4 11186.0 5 6675.5 6 2165.0 7 2725.0 8 3285.0 9 4626.5 10 5968.0 11 7211.5 12 8455.0 13 8741.5 14 8268.0 15 7508.0 16 6568.0 17 5628.0 18 5081.0 19 4534.0 20 4304.0 21 4074.0 22 3892.0 23 3710.0 24 3767.5 25 3825.0 26 4472.0 27 5119.0 28 5906.5 29 6694.0 30 7723.0 31 8752.0 32 10461.0 33 12170.0 34 16230.0 35 20290.0 36 22656.5 37 25023.0 38 27751.5 39 32218.0 40 33956.0 41 45800.0 42 57644.0 43 70165.5 44 82687.0 45 93466.5 46 104246.0 47 114788.0 48 125330.0 49 141684.5 50 158039.0 51 139406.5 52 120774.0 53 97917.5 54 75061.0 55 65821.5 56 56582.0 57 52774.5 58 48967.0 59 44371.0 60 39775.0 61 33318.0 62 26861.0 63 22673.5 64 13923.0 65 9360.0 66 7557.5 67 5755.0 68 4662.0 69 3569.0 70 2890.5 71 2212.0 72 1933.0 73 1654.0 74 1229.5 75 805.0 76 595.5 77 386.0 78 262.0 79 138.0 80 147.5 81 157.0 82 109.5 83 62.0 84 53.0 85 44.0 86 24.0 87 4.0 88 2.0 89 0.5 90 1.0 91 0.5 92 0.0 93 0.0 94 0.0 95 0.0 96 0.0 97 0.0 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1153198.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 24.000480255482014 #Duplication Level Percentage of deduplicated Percentage of total 1 71.62554641274768 17.190475124672613 2 11.826608046346495 5.676885458113276 3 4.616201837270905 3.3237318315222044 4 2.262509535150071 2.1720526170483625 5 1.3541639460373365 1.625029252477735 6 0.9390266710159905 1.3522254646254168 7 0.6770724012948384 1.1375043959165994 8 0.5339515882753556 1.0252075641428748 9 0.452101433234095 0.9765586369629017 >10 4.146611942511753 21.91845451224335 >50 1.0045923114631632 17.257216590172547 >100 0.5467390885665515 18.847877568217125 >500 0.008707191855074296 1.4164272421206021 >1k 0.004716395588165244 2.2677464248963526 >5k 0.001088398981884287 2.5626649144188507 >10k+ 3.627996606280957E-4 1.2499424024492067 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 14355 1.2447992452293535 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 9989 0.8661999066942536 No Hit CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 9752 0.8456483622066635 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 9690 0.840272008796408 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4303 0.3731362697472594 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 4153 0.36012896310954406 No Hit CTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCTT 2877 0.24948014131137933 Illumina Single End Adapter 1 (95% over 21bp) CCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT 2275 0.1972774840053486 No Hit GCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGCT 2186 0.1895598154003042 No Hit GGGTAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 1774 0.15383307983537953 No Hit ACCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCGTCTTCTGC 1370 0.118800067291133 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCAAGGAGCTTCGTATGCCG 1338 0.11602517520842041 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 1289 0.11177612170676675 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 1197 0.10379830696896804 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.25546350236472837 0.0 2 0.0 0.0 0.0 0.7950065816971587 0.0 3 0.0 0.0 0.0 1.4572519203120367 0.0 4 0.0 0.0 0.0 1.9522232955658958 0.0 5 0.0 0.0 0.0 4.453094785110623 0.0 6 0.0 0.0 0.0 4.976855665722625 0.0 7 0.0 0.0 0.0 6.366816453028881 0.0 8 0.0 0.0 0.0 8.214374287849962 0.0 9 0.0 0.0 0.0 9.564532716844809 0.0 10 0.0 0.0 0.0 10.793549763353735 0.0 11 0.0 0.0 0.0 11.925358871590134 0.0 12 0.0 0.0 0.0 12.76667146491756 0.0 13 0.0 0.0 0.0 13.093328292279383 0.0 14 0.0 0.0 0.0 13.297196144981173 0.0 15 0.0 0.0 0.0 13.926836501624178 0.0 16 0.0 0.0 0.0 14.761818872387916 0.0 17 0.0 0.0 0.0 15.774914628710768 0.0 18 0.0 0.0 0.0 16.242917521535762 0.0 19 0.0 0.0 0.0 16.74725415756878 0.0 20 0.0 0.0 0.0 17.367182391922288 0.0 21 0.0 0.0 0.0 17.999771071403178 0.0 22 0.0 0.0 0.0 18.646407642052797 0.0 23 0.0 0.0 0.0 19.08163212215075 0.0 24 0.0 0.0 0.0 19.44843816933432 0.0 25 0.0 0.0 0.0 19.806399248004247 0.0 26 0.0 0.0 0.0 20.253156873320975 0.0 27 0.0 0.0 0.0 20.693150699186088 0.0 28 0.0 0.0 0.0 21.1508344620785 0.0 29 0.0 0.0 0.0 21.57417893544734 0.0 30 0.0 0.0 0.0 22.031082259941485 0.0 31 0.0 0.0 0.0 22.366757486572123 0.0 32 0.0 0.0 0.0 22.78637319870482 0.0 33 0.0 0.0 0.0 23.23096293958193 0.0 34 0.0 0.0 0.0 23.830946637090943 0.0 35 0.0 0.0 0.0 24.210846706289814 0.0 36 0.0 0.0 0.0 24.620923726888183 0.0 37 0.0 0.0 0.0 25.192464780549393 0.0 38 0.0 0.0 0.0 26.39910925964145 0.0 39 0.0 0.0 0.0 26.88922457375056 0.0 40 0.0 0.0 0.0 27.314476785426265 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position AACGTAC 20 6.3114637E-4 46.0 14 CGTGGAT 20 6.3114637E-4 46.0 40 CGGCCTA 20 6.3114637E-4 46.0 5 CGCATCG 20 6.3114637E-4 46.0 20 GGCCGTA 20 6.3114637E-4 46.0 16 TTCACGT 20 6.3114637E-4 46.0 9 TCGGGTA 45 3.092282E-10 46.0 4 CCGCTTG 20 6.3114637E-4 46.0 38 TGCGGAT 50 1.6370905E-11 46.0 26 ACCTCGC 20 6.3114637E-4 46.0 18 GCCGATT 25 3.4171626E-5 46.0 8 CTAACGG 150 0.0 46.0 1 ACGATAC 20 6.3114637E-4 46.0 46 CTCGGTA 20 6.3114637E-4 46.0 31 AACGCGA 20 6.3114637E-4 46.0 17 AGCGCCG 20 6.3114637E-4 46.0 17 AGCGCAT 20 6.3114637E-4 46.0 32 GATATCG 20 6.3114637E-4 46.0 14 GAACGTT 20 6.3114637E-4 46.0 8 CGAATGC 45 3.092282E-10 46.0 45 >>END_MODULE