SRR2933078.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933078.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1746899
Sequences flagged as poor quality	0
Sequence length	52
%GC	47

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	6634	0.3797586466075028	No Hit
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	6026	0.34495411583611874	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	4817	0.27574576435157383	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3873	0.22170715078547756	No Hit
CTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGCTT	2736	0.15662038847122817	TruSeq Adapter, Index 22 (95% over 24bp)
CCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGCT	2269	0.12988730315833943	TruSeq Adapter, Index 20 (95% over 22bp)
GCTGTCTCTTATACACATCTGACGCAAAGGTCCTCGTATGCCGTCTTCTGCT	2148	0.12296074358048176	TruSeq Adapter, Index 20 (95% over 22bp)
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	2124	0.12158688052371659	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATTTACG	20	6.312359E-4	46.000004	27
AATGCGT	20	6.312359E-4	46.000004	9
ATATCCG	20	6.312359E-4	46.000004	35
ACTCGTA	20	6.312359E-4	46.000004	41
TCGTATA	35	1.0199801E-7	46.000004	40
ATCGGCA	20	6.312359E-4	46.000004	9
TCGAATC	20	6.312359E-4	46.000004	46
ATTACGT	25	3.4178905E-5	46.0	24
TAAGCGC	25	3.4178905E-5	46.0	18
GTACGTC	25	3.4178905E-5	46.0	40
CGGTCTA	410	0.0	45.439026	30
CACGACG	420	0.0	44.904762	25
TACGGGA	855	0.0	44.11696	3
CTTACGG	225	0.0	43.955555	1
CCGACGG	105	0.0	43.809525	1
CTAACGG	190	0.0	43.57895	1
ACTACGG	90	0.0	43.444447	1
CTAGCGG	505	0.0	42.811886	1
CTTGCGG	490	0.0	42.714287	1
ACGGATA	65	0.0	42.46154	9