SRR2933076.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933076.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1048525
Sequences flagged as poor quality	0
Sequence length	52
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	19497	1.8594692544288405	No Hit
GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	6124	0.5840585584511576	No Hit
GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3456	0.3296058749195298	No Hit
GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	3326	0.3172075057819318	No Hit
AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1880	0.1792994921437257	No Hit
CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCG	1740	0.16594740230323551	No Hit
CTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCTT	1609	0.15345366109534822	Illumina Single End Adapter 1 (95% over 21bp)
TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC	1527	0.14563315133163254	No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA	1493	0.1423905009417992	No Hit
CCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	1465	0.13972008297370114	No Hit
GCTGTCTCTTATACACATCTGACGCCGCTAAATTCGTATGCCGTCTTCTGCT	1062	0.10128513864714718	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ATACCGG	35	1.0194526E-7	46.000004	1
ATGACGG	80	0.0	46.0	1
TACTCGC	25	3.4169487E-5	46.0	44
AATCGGC	20	6.3111994E-4	46.0	46
ACGTAGG	130	0.0	44.23077	1
CGTTTTT	6150	0.0	44.09268	1
CCAATCG	95	0.0	43.578945	23
TAACCGG	95	0.0	43.578945	1
CTTGCGG	290	0.0	42.827587	1
ATTGCGG	275	0.0	42.65455	1
TCACGAC	270	0.0	42.592594	24
CACGACG	260	0.0	42.46154	25
CGCACTT	2295	0.0	42.29194	34
ATAGCGG	120	0.0	42.166668	1
GCACTTA	2310	0.0	42.017315	35
TCGACGG	115	0.0	42.0	1
ACCCGCA	2370	0.0	41.92405	31
TCAACGC	2530	0.0	41.909092	15
CTCGCGG	110	0.0	41.81818	1
CCCGCAC	2380	0.0	41.747894	32