Basic Statistics
Measure | Value |
---|---|
Filename | SRR2933072.fastq |
File type | Conventional base calls |
Encoding | Sanger / Illumina 1.9 |
Total Sequences | 1529512 |
Sequences flagged as poor quality | 0 |
Sequence length | 52 |
%GC | 47 |
Per base sequence quality
Per sequence quality scores
Per base sequence content
Per sequence GC content
Per base N content
Sequence Length Distribution
Sequence Duplication Levels
Overrepresented sequences
Sequence | Count | Percentage | Possible Source |
---|---|---|---|
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC | 30577 | 1.9991343644247317 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG | 16978 | 1.110027250521735 | No Hit |
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 15816 | 1.0340553065291413 | No Hit |
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCACTGTCTCTTA | 3948 | 0.2581215446495353 | No Hit |
CTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCTT | 2745 | 0.17946900710814953 | Illumina Single End Adapter 1 (95% over 21bp) |
GGGGTTGGGGATTTAGCCTGTCTCTTATACACATCTGACGCCACTTCCGTCG | 2697 | 0.1763307512461491 | No Hit |
GGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 2609 | 0.170577282165815 | No Hit |
GGGGCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCT | 2598 | 0.16985809853077322 | No Hit |
GCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT | 2339 | 0.15292459294206256 | No Hit |
GGGGTTGGGGATTTAGCTCCTGTCTCTTATACACATCTGACGCCACTTCCGT | 2201 | 0.1439021073388113 | No Hit |
CCTGTCTCTTATACACATCTGACGCCACTTCCGTCGTATGCCGTCTTCTGCT | 2021 | 0.13213364785630974 | No Hit |
GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCCT | 1923 | 0.12572637547139218 | No Hit |
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT | 1739 | 0.1136963946670572 | No Hit |
TGGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGG | 1656 | 0.1082698272390148 | No Hit |
Adapter Content
Kmer Content
Sequence | Count | PValue | Obs/Exp Max | Max Obs/Exp Position |
---|---|---|---|---|
TCGTAAG | 75 | 0.0 | 46.000004 | 1 |
CACGTGA | 155 | 0.0 | 46.000004 | 43 |
ATTAGCG | 20 | 6.312114E-4 | 46.0 | 1 |
GTCGAAC | 25 | 3.4176897E-5 | 46.0 | 1 |
CGCGGAT | 20 | 6.312114E-4 | 46.0 | 25 |
AAGCGTT | 25 | 3.4176897E-5 | 46.0 | 23 |
TAACGTT | 20 | 6.312114E-4 | 46.0 | 32 |
ACGGGTA | 50 | 1.6370905E-11 | 46.0 | 5 |
ATCGTCC | 20 | 6.312114E-4 | 46.0 | 22 |
TACGCCC | 30 | 1.8618102E-6 | 46.0 | 17 |
CTACGAA | 120 | 0.0 | 46.0 | 11 |
ACAATCG | 20 | 6.312114E-4 | 46.0 | 18 |
AACGCAT | 20 | 6.312114E-4 | 46.0 | 34 |
AATTCGC | 30 | 1.8618102E-6 | 46.0 | 10 |
ATGACGT | 25 | 3.4176897E-5 | 46.0 | 19 |
CGTAATC | 20 | 6.312114E-4 | 46.0 | 17 |
ACGTATA | 20 | 6.312114E-4 | 46.0 | 28 |
ACCGTCA | 20 | 6.312114E-4 | 46.0 | 46 |
TAGGCGT | 25 | 3.4176897E-5 | 46.0 | 32 |
ATAGTGC | 30 | 1.8618102E-6 | 46.0 | 19 |