SRR2933069.fastq FastQC Report

Basic Statistics

Measure	Value
Filename	SRR2933069.fastq
File type	Conventional base calls
Encoding	Sanger / Illumina 1.9
Total Sequences	1572939
Sequences flagged as poor quality	0
Sequence length	52
%GC	45

Per base quality graph

Per Sequence quality graph

Per sequence GC content graph

N content graph

Sequence length distribution

Duplication level graph

Sequence	Count	Percentage	Possible Source
CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	38698	2.4602352665933007	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC	10188	0.6477047107357627	No Hit
GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG	5351	0.3401911962256642	No Hit
CGTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC	2760	0.17546770726646108	No Hit
CGTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTT	2419	0.15378854488317728	No Hit
CGTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	1995	0.1268326362306485	No Hit
GGGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT	1899	0.12072941163007592	No Hit
GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCCT	1807	0.11488048805452723	No Hit
TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT	1722	0.10947659127277028	No Hit

Adapter graph

Kmer graph

Sequence	Count	PValue	Obs/Exp Max	Max Obs/Exp Position
ACACGAT	25	3.417735E-5	46.0	34
CGACGTC	25	3.417735E-5	46.0	42
CGCATTA	20	6.3121686E-4	46.0	29
TAGTTCG	20	6.3121686E-4	46.0	42
TATACGG	110	0.0	43.909092	2
CGTTTTT	9940	0.0	43.80181	1
GGCGATA	135	0.0	40.88889	8
CGATAGG	255	0.0	40.58823	2
CGAACGT	40	2.9114926E-7	40.25	38
CTATACG	40	2.9114926E-7	40.25	1
GCGATCG	40	2.9114926E-7	40.25	9
CGATACG	40	2.9114926E-7	40.25	36
TAGGGAC	760	0.0	39.947365	5
GTATTCG	35	5.374375E-6	39.428574	20
CGTATGG	105	0.0	39.42857	2
AGGGATC	1595	0.0	39.222572	6
CATACGA	575	0.0	38.8	18
ATACGGG	280	0.0	38.607143	3
TACGAAA	585	0.0	38.529915	20
ACGGGAT	430	0.0	38.511627	5