##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933069.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1572939 Sequences flagged as poor quality 0 Sequence length 52 %GC 45 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.52946872065605 33.0 31.0 34.0 31.0 34.0 2 32.92267150855818 34.0 31.0 34.0 31.0 34.0 3 32.94431316154028 34.0 31.0 34.0 31.0 34.0 4 36.403638030463995 37.0 37.0 37.0 35.0 37.0 5 36.338432704637626 37.0 37.0 37.0 35.0 37.0 6 36.4137293308895 37.0 37.0 37.0 35.0 37.0 7 36.55389306260446 37.0 37.0 37.0 35.0 37.0 8 36.50319370299802 37.0 37.0 37.0 35.0 37.0 9 38.338851029823786 39.0 39.0 39.0 37.0 39.0 10 38.040009180267006 39.0 39.0 39.0 35.0 39.0 11 37.78078615890381 39.0 38.0 39.0 35.0 39.0 12 37.45866305050609 39.0 37.0 39.0 35.0 39.0 13 37.386060743614344 39.0 37.0 39.0 35.0 39.0 14 38.49180673885001 41.0 38.0 41.0 34.0 41.0 15 38.65560902234607 41.0 38.0 41.0 34.0 41.0 16 38.80096367373433 41.0 38.0 41.0 35.0 41.0 17 38.80863402840161 41.0 38.0 41.0 35.0 41.0 18 38.66773981699227 40.0 38.0 41.0 35.0 41.0 19 38.56260477996922 40.0 37.0 41.0 35.0 41.0 20 38.39103042139587 40.0 35.0 41.0 35.0 41.0 21 38.35704690391681 40.0 35.0 41.0 35.0 41.0 22 38.28705944731487 40.0 35.0 41.0 35.0 41.0 23 38.237320074077886 40.0 35.0 41.0 35.0 41.0 24 38.198424096547924 40.0 35.0 41.0 34.0 41.0 25 38.083593832945844 40.0 35.0 41.0 34.0 41.0 26 37.98525181205374 40.0 35.0 41.0 34.0 41.0 27 37.88168072633459 40.0 35.0 41.0 34.0 41.0 28 37.83333810147755 40.0 35.0 41.0 34.0 41.0 29 37.776755487657184 40.0 35.0 41.0 34.0 41.0 30 37.72107437097052 40.0 35.0 41.0 34.0 41.0 31 37.578070096806044 40.0 35.0 41.0 34.0 41.0 32 37.41779306126938 40.0 35.0 41.0 33.0 41.0 33 37.23375095919168 40.0 35.0 41.0 33.0 41.0 34 37.01640686638198 40.0 35.0 41.0 33.0 41.0 35 36.89074655787669 40.0 35.0 41.0 32.0 41.0 36 36.811421803388434 40.0 35.0 41.0 32.0 41.0 37 36.6846482921461 40.0 35.0 41.0 32.0 41.0 38 36.64724569738559 40.0 35.0 41.0 32.0 41.0 39 36.576167289386305 40.0 35.0 41.0 31.0 41.0 40 36.513258937568466 39.0 35.0 41.0 31.0 41.0 41 36.39592253736477 39.0 35.0 41.0 31.0 41.0 42 36.37776862294088 39.0 35.0 41.0 31.0 41.0 43 36.32892121054917 39.0 35.0 41.0 31.0 41.0 44 36.27123620178532 39.0 35.0 41.0 31.0 41.0 45 36.198426003805615 39.0 35.0 41.0 31.0 41.0 46 36.12630114708835 39.0 35.0 41.0 31.0 41.0 47 36.039171894142115 39.0 35.0 41.0 31.0 41.0 48 35.91848126341835 38.0 35.0 41.0 30.0 41.0 49 35.84419166922557 38.0 35.0 41.0 30.0 41.0 50 35.72038775820295 38.0 35.0 41.0 30.0 41.0 51 35.5946606956786 37.0 35.0 40.0 29.0 41.0 52 35.35315864124419 37.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 12 6.0 13 6.0 14 7.0 15 30.0 16 60.0 17 171.0 18 340.0 19 597.0 20 1083.0 21 1783.0 22 3012.0 23 4781.0 24 7985.0 25 12803.0 26 17367.0 27 19269.0 28 19789.0 29 19898.0 30 21197.0 31 24721.0 32 29817.0 33 40152.0 34 100128.0 35 156989.0 36 101583.0 37 108886.0 38 186211.0 39 690465.0 40 3803.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 35.54333639130316 21.878470811646224 26.109276964968124 16.46891583208249 2 38.560935929492494 22.850091453006126 25.427559492135423 13.161413125365955 3 29.647303550868788 23.34572415077762 33.07788795369687 13.929084344656722 4 26.630848367292053 26.9149026122437 32.31631995900667 14.137929061457562 5 25.174974999030475 31.534344307058316 29.267377819483148 14.023302874428062 6 27.494136771991794 38.483246966347714 25.054627038937937 8.96798922272256 7 85.75176786893833 1.6505408029173414 10.742756076364055 1.854935251780266 8 84.26881144151172 2.0649243231937158 11.221032729177672 2.4452315061168934 9 79.0609171747919 4.054130516186579 13.090653865153069 3.7942984438684526 10 42.68735151204211 23.189392595644204 19.766500798823095 14.356755093490591 11 29.748070332034494 24.52860536867609 30.32272707333215 15.400597225957268 12 30.06766314523322 19.92048006947504 31.59855531587684 18.413301469414897 13 28.229066734310738 20.472567594801834 34.153835590572804 17.14453008031462 14 19.86644110165747 21.823986817034864 37.06094133338928 21.248630747918387 15 16.28213172920247 27.723325570794543 37.94075930471556 18.05378339528742 16 25.83927285164905 26.492381459166563 32.369723174261686 15.298622514922702 17 24.96829184094234 25.311788950493312 30.886258144785018 18.833661063779335 18 21.33680962834541 25.330607226345077 34.873443916134065 18.45913922917545 19 21.345710164221245 26.976189159274455 31.49816998624867 20.179930690255627 20 19.236791763698402 32.11821946051309 30.99281027427001 17.652178501518495 21 23.21984514339081 27.017449500584572 33.75401080397904 16.008694552045565 22 21.704401760017394 23.91332403863087 35.20568820532773 19.176585996024002 23 19.828423098416405 24.780744834987246 35.51568115483181 19.87515091176454 24 20.453940044718834 26.04150574179927 33.621202093660344 19.883352119821556 25 22.62408141701617 26.181816332356185 32.20639834094011 18.987703909687532 26 20.710720504736674 28.598820424695425 29.34557538467798 21.34488368588992 27 21.717752563831148 26.07723503581512 32.55212058446005 19.652891815893685 28 18.949558755933957 27.80889786571507 30.774302118518264 22.467241259832708 29 21.171768263104926 27.24574824579974 30.771695533011766 20.810787958083562 30 24.5457706878652 25.51688272717505 29.819846796347477 20.11749978861227 31 22.915637542206024 26.075899955433744 31.65418366510081 19.35427883725942 32 24.887869141778545 25.912066520062126 29.102972206805223 20.097092131354106 33 24.19718755781375 26.472164527677172 30.041915166449556 19.288732748059527 34 21.012257945158712 27.047520596793646 32.18980519905731 19.750416258990334 35 21.788066797250245 28.44337892314959 29.877509553771635 19.89104472582853 36 23.54420610080874 27.962877136367016 28.583625938450254 19.90929082437399 37 20.534744195420167 29.609221972371465 29.634715650130104 20.221318182078264 38 22.830573849335543 27.249689911687614 30.25298501721936 19.666751221757487 39 20.934441831501413 28.323348839338337 29.335911945727076 21.406297383433177 40 23.965074297223225 26.449595311706304 29.730014959257794 19.855315431812677 41 20.756049662447175 26.281375183653022 29.62365355554157 23.338921598358233 42 19.504062140998474 28.278782584702906 31.57967346476882 20.637481809529802 43 20.213879877096314 27.27550146572753 31.325118138719937 21.185500518456216 44 22.513015444337004 26.64966664314382 29.794353118588834 21.042964793930345 45 20.740473724664465 26.186965928112915 29.27774058625287 23.79481976096975 46 21.92189271166905 26.621757105647454 29.241820566468245 22.214529616215252 47 20.14165838598954 26.266053546895336 31.494482621385828 22.0978054457293 48 20.234796136404526 27.832484285786034 30.710345410724766 21.222374167084674 49 22.01827280015309 26.830538247192038 30.36099937759824 20.79018957505663 50 20.679568629171253 26.645724977255952 30.738509249246153 21.936197144326638 51 20.425585480428676 26.55029851761575 30.116933968831596 22.90718203312398 52 20.559284244334968 26.842744696393183 30.508493972112078 22.08947708715977 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1163.0 1 3723.5 2 6284.0 3 27402.0 4 48520.0 5 28195.0 6 7870.0 7 8084.5 8 8299.0 9 9745.5 10 11192.0 11 12938.0 12 14684.0 13 15146.5 14 15245.5 15 14882.0 16 13799.5 17 12717.0 18 12092.5 19 11468.0 20 10807.5 21 10147.0 22 10243.5 23 10340.0 24 10967.0 25 11594.0 26 12818.5 27 14043.0 28 16091.0 29 18139.0 30 20601.5 31 23064.0 32 26351.0 33 29638.0 34 31929.0 35 34220.0 36 37220.0 37 40220.0 38 44356.5 39 53412.5 40 58332.0 41 63814.5 42 69297.0 43 74223.5 44 79150.0 45 88712.0 46 98274.0 47 107508.5 48 116743.0 49 123388.0 50 130033.0 51 126047.5 52 122062.0 53 112002.0 54 101942.0 55 97407.5 56 92873.0 57 86416.0 58 79959.0 59 78026.0 60 76093.0 61 63744.0 62 51395.0 63 44181.5 64 30558.5 65 24149.0 66 20145.5 67 16142.0 68 13377.5 69 10613.0 70 8379.5 71 6146.0 72 5037.0 73 3928.0 74 3172.0 75 2416.0 76 2142.0 77 1868.0 78 1429.0 79 990.0 80 705.0 81 420.0 82 316.5 83 213.0 84 157.0 85 101.0 86 110.5 87 120.0 88 107.5 89 60.0 90 25.0 91 15.0 92 5.0 93 2.5 94 0.0 95 0.5 96 1.0 97 0.5 98 0.0 99 0.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1572939.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 23.47497420750753 #Duplication Level Percentage of deduplicated Percentage of total 1 72.78629861807364 17.0865648271922 2 9.303760907215665 4.368110946594092 3 3.7465695813010513 2.638518728630234 4 2.0250003623686226 1.9014732510718728 5 1.2810087449192382 1.5035823623285356 6 0.9056855798031499 1.2756567375594268 7 0.6936615024195295 1.1398580114627563 8 0.5841152885823597 1.096967306694537 9 0.47294054694097465 0.9992040427011493 >10 6.699481099505429 37.94512850464742 >50 1.4106803029466748 21.865777210321443 >100 0.0823701562742862 2.6635694131745993 >500 0.0035340330787648165 0.5605633614706818 >1k 0.004077730475497865 1.493814567999285 >5k 2.718486983665244E-4 0.34148161967550295 >10k+ 5.436973967330488E-4 3.119729108476292 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 38698 2.4602352665933007 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCGCTTGCCTAGCAAGCGCAAGGC 10188 0.6477047107357627 No Hit GGGGTTGGGGATTTAGCTCAGTGGTAGAGCTGTCTCTTATACACATCTGACG 5351 0.3401911962256642 No Hit CGTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTC 2760 0.17546770726646108 No Hit CGTTTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTT 2419 0.15378854488317728 No Hit CGTTCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT 1995 0.1268326362306485 No Hit GGGGCTGTCTCTTATACACATCTGACGCGGATACGTTCGTATGCCGTCTTCT 1899 0.12072941163007592 No Hit GCCCTGCTAGAGGACTTTCGTCTGTATCTATGCTCTGCCCCATGCAGCTCCT 1807 0.11488048805452723 No Hit TGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 1722 0.10947659127277028 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 1.271505125119283E-4 0.0 0.0 0.0842372145391525 0.0 2 1.271505125119283E-4 0.0 0.0 0.22626433701497642 0.0 3 1.271505125119283E-4 0.0 0.0 0.41718083155163677 0.0 4 1.271505125119283E-4 0.0 0.0 0.6288864348839974 0.0 5 1.271505125119283E-4 0.0 0.0 1.3114303860480285 0.0 6 1.271505125119283E-4 0.0 0.0 2.2158519815453745 0.0 7 1.271505125119283E-4 0.0 0.0 2.9292935072498043 0.0 8 1.271505125119283E-4 0.0 0.0 3.992017490824501 0.0 9 1.271505125119283E-4 0.0 0.0 4.69744853424068 0.0 10 1.271505125119283E-4 0.0 0.0 5.407011969313495 0.0 11 1.271505125119283E-4 0.0 0.0 6.22592484514657 0.0 12 1.271505125119283E-4 0.0 0.0 6.687226904539846 0.0 13 1.271505125119283E-4 0.0 0.0 6.938349166750904 0.0 14 1.271505125119283E-4 0.0 0.0 7.23848795153531 0.0 15 1.271505125119283E-4 0.0 0.0 7.427878639921828 0.0 16 1.271505125119283E-4 0.0 0.0 7.6677480817755805 0.0 17 1.271505125119283E-4 0.0 0.0 7.92847020768129 0.0 18 1.271505125119283E-4 0.0 0.0 8.212143001095402 0.0 19 1.271505125119283E-4 0.0 0.0 8.419716212771124 0.0 20 1.271505125119283E-4 0.0 0.0 8.69404344351561 0.0 21 1.271505125119283E-4 0.0 0.0 8.97174016284166 0.0 22 1.271505125119283E-4 0.0 0.0 9.262151933418906 0.0 23 1.271505125119283E-4 0.0 0.0 9.547414108239417 0.0 24 1.271505125119283E-4 0.0 0.0 9.766812317578749 0.0 25 1.271505125119283E-4 0.0 0.0 10.000578534831929 0.0 26 1.271505125119283E-4 0.0 0.0 10.21069475675789 0.0 27 1.271505125119283E-4 0.0 0.0 10.463088524094069 0.0 28 1.271505125119283E-4 0.0 0.0 10.68312248599596 0.0 29 1.271505125119283E-4 0.0 0.0 10.960692054809499 0.0 30 1.271505125119283E-4 0.0 0.0 11.567835752053957 0.0 31 1.271505125119283E-4 0.0 0.0 11.879799534501974 0.0 32 1.271505125119283E-4 0.0 0.0 12.184070710943018 0.0 33 1.271505125119283E-4 0.0 0.0 12.45483772733717 0.0 34 1.9072576876789246E-4 0.0 0.0 12.745821675220718 0.0 35 1.9072576876789246E-4 0.0 0.0 13.022437615190418 0.0 36 2.543010250238566E-4 0.0 0.0 13.272224797020101 0.0 37 2.543010250238566E-4 0.0 0.0 13.547759957633449 0.0 38 2.543010250238566E-4 0.0 0.0 13.862203175075448 0.0 39 2.543010250238566E-4 0.0 0.0 14.730196148738127 0.0 40 3.1787628127982076E-4 0.0 0.0 15.085009653902663 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position ACACGAT 25 3.417735E-5 46.0 34 CGACGTC 25 3.417735E-5 46.0 42 CGCATTA 20 6.3121686E-4 46.0 29 TAGTTCG 20 6.3121686E-4 46.0 42 TATACGG 110 0.0 43.909092 2 CGTTTTT 9940 0.0 43.80181 1 GGCGATA 135 0.0 40.88889 8 CGATAGG 255 0.0 40.58823 2 CGAACGT 40 2.9114926E-7 40.25 38 CTATACG 40 2.9114926E-7 40.25 1 GCGATCG 40 2.9114926E-7 40.25 9 CGATACG 40 2.9114926E-7 40.25 36 TAGGGAC 760 0.0 39.947365 5 GTATTCG 35 5.374375E-6 39.428574 20 CGTATGG 105 0.0 39.42857 2 AGGGATC 1595 0.0 39.222572 6 CATACGA 575 0.0 38.8 18 ATACGGG 280 0.0 38.607143 3 TACGAAA 585 0.0 38.529915 20 ACGGGAT 430 0.0 38.511627 5 >>END_MODULE