##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933066.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 1974832 Sequences flagged as poor quality 0 Sequence length 52 %GC 42 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.50307874290066 33.0 31.0 34.0 31.0 34.0 2 32.86644484189035 34.0 31.0 34.0 31.0 34.0 3 32.84683152794769 34.0 31.0 34.0 31.0 34.0 4 36.360844365495396 37.0 37.0 37.0 35.0 37.0 5 36.34121332852617 37.0 37.0 37.0 35.0 37.0 6 36.478979984120166 37.0 37.0 37.0 35.0 37.0 7 36.524079516637364 37.0 37.0 37.0 35.0 37.0 8 36.3688374504768 37.0 37.0 37.0 35.0 37.0 9 38.025227462386674 39.0 39.0 39.0 35.0 39.0 10 37.98786124591864 39.0 39.0 39.0 35.0 39.0 11 37.875576757921685 39.0 38.0 39.0 35.0 39.0 12 37.8523849117292 39.0 38.0 39.0 35.0 39.0 13 37.864150469508296 39.0 38.0 39.0 35.0 39.0 14 39.367747737529065 41.0 39.0 41.0 35.0 41.0 15 39.36270427054048 41.0 39.0 41.0 35.0 41.0 16 39.33214774725141 41.0 39.0 41.0 35.0 41.0 17 39.29432630218672 41.0 39.0 41.0 35.0 41.0 18 39.07455874727572 40.0 39.0 41.0 35.0 41.0 19 38.843939130012075 40.0 37.0 41.0 35.0 41.0 20 38.59371987085484 40.0 36.0 41.0 35.0 41.0 21 38.53839263289232 40.0 36.0 41.0 35.0 41.0 22 38.474836340508965 40.0 36.0 41.0 35.0 41.0 23 38.43006746903028 40.0 36.0 41.0 35.0 41.0 24 38.37595349882927 40.0 35.0 41.0 35.0 41.0 25 38.3116214442545 40.0 35.0 41.0 35.0 41.0 26 38.218771014445785 40.0 35.0 41.0 35.0 41.0 27 38.12697991525355 40.0 35.0 41.0 35.0 41.0 28 38.07659031249241 40.0 35.0 41.0 35.0 41.0 29 37.99182006368137 40.0 35.0 41.0 34.0 41.0 30 37.919533914783635 40.0 35.0 41.0 34.0 41.0 31 37.75770293371791 40.0 35.0 41.0 34.0 41.0 32 37.45649402075721 40.0 35.0 41.0 33.0 41.0 33 37.03369400536349 40.0 35.0 41.0 32.0 41.0 34 36.66268472457404 40.0 35.0 41.0 31.0 41.0 35 36.36385829275604 40.0 35.0 41.0 30.0 41.0 36 36.211374435901384 40.0 35.0 41.0 29.0 41.0 37 36.089952968151216 40.0 35.0 41.0 27.0 41.0 38 36.005678964084034 40.0 35.0 41.0 26.0 41.0 39 35.966787048214734 40.0 35.0 41.0 26.0 41.0 40 35.926942139888354 40.0 35.0 41.0 26.0 41.0 41 35.84850559439993 40.0 35.0 41.0 25.0 41.0 42 35.79440023252611 40.0 35.0 41.0 24.0 41.0 43 35.70039021040777 40.0 35.0 41.0 24.0 41.0 44 35.60221831527948 39.0 35.0 41.0 24.0 41.0 45 35.52525126187949 39.0 35.0 41.0 23.0 41.0 46 35.436986538601765 39.0 35.0 41.0 23.0 41.0 47 35.361540627253355 39.0 35.0 41.0 23.0 41.0 48 35.272889035624296 39.0 35.0 41.0 23.0 41.0 49 35.194336530904906 39.0 35.0 41.0 23.0 41.0 50 35.092797260729014 39.0 35.0 41.0 23.0 41.0 51 35.002620476070874 38.0 35.0 41.0 23.0 41.0 52 34.79026266538116 38.0 35.0 40.0 22.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 1.0 10 3.0 11 4.0 12 9.0 13 14.0 14 14.0 15 31.0 16 86.0 17 169.0 18 365.0 19 755.0 20 1450.0 21 2462.0 22 3939.0 23 6758.0 24 12753.0 25 25283.0 26 37871.0 27 39923.0 28 35789.0 29 30138.0 30 28702.0 31 30597.0 32 35103.0 33 43193.0 34 78265.0 35 128847.0 36 135542.0 37 144611.0 38 238454.0 39 906244.0 40 7457.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 30.118865807319306 19.476036442593596 21.175978513615334 29.229119236471764 2 36.85888217326841 20.69482366094939 22.378865645280204 20.067428520502 3 23.45865369813736 22.30144133779481 33.82110478258404 20.418800181483792 4 21.980249459194503 25.43963233328202 32.813170943148585 19.766947264374892 5 20.868863781830555 32.74248138575838 29.909734093836843 16.478920738574217 6 78.06258962787722 2.8466725270807847 16.329389031573317 2.76134881346869 7 78.77925818500005 2.1839326079382952 15.477519100358917 3.559290106702748 8 72.04633102967746 4.868667309421763 18.598442804248666 4.48655885665211 9 31.10269633062458 28.55994839054664 25.377146005331085 14.960209273497696 10 22.773835951615123 23.252357668905507 35.50317191538318 18.470634464096186 11 21.969970103786043 20.031273546306725 38.61062611908254 19.3881302308247 12 19.12213292067376 22.489406693835225 39.15700170951251 19.231458675978512 13 16.804771241300525 24.38683391802442 38.46352499858216 20.344869842092898 14 16.190946875481053 24.75400439125961 41.18198408776038 17.87306464549896 15 19.30078102846217 22.700715807724404 38.38706279825322 19.61144036556021 16 18.082702731169032 25.57589708896757 36.675777990229044 19.66562218963436 17 17.754674828036006 25.680766769021364 38.491021008369316 18.07353739457331 18 18.954017354387613 30.09106597421958 34.15450023090572 16.80041644048709 19 20.309322514522755 25.361347193077687 34.75829842741053 19.57103186498902 20 18.586289871746054 27.722965801647938 33.41448791593412 20.276256410671895 21 17.741610425595695 26.101663331361856 34.08659572054737 22.070130522495077 22 17.039373475819716 28.471738355465178 33.211432668702955 21.277455500012152 23 16.2381407633662 27.177096583405575 36.93412908034709 19.650633572881134 24 18.171925510625712 28.848783086358736 33.52183881970719 19.457452583308353 25 18.694400333800544 27.418889302988813 34.011095627374885 19.875614735835757 26 16.765780582854642 25.906102392507314 33.46517577191376 23.862941252724283 27 18.650295316259815 25.809081481361453 34.251723690926624 21.288899511452115 28 19.32660601003022 24.814009495491263 32.38265330924352 23.476731185234996 29 18.666347314607016 25.47062231116368 34.310665413564294 21.552364960665006 30 19.76092143534235 26.151642266278852 31.43735770941528 22.650078588963517 31 20.002764792144344 24.932348675735454 31.61008126260867 23.45480526951153 32 20.321019712056522 26.180302932097515 30.106864786472975 23.391812569372988 33 17.77032172863312 24.96176889983553 33.71501980927998 23.552889562251373 34 18.37244889691883 28.252833658761862 32.2879110729419 21.086806371377413 35 19.294198190023256 30.44896983642153 31.15064977679114 19.10618219676408 36 19.079141921945766 31.252835684250606 30.06883623518355 19.599186158620075 37 17.89600330559764 30.135424177854116 33.488671441418816 18.47990107512943 38 17.454345483565184 31.64947701880464 29.505294627593635 21.39088287003654 39 18.787319630226772 28.840529219700713 31.777842368363483 20.594308781709024 40 17.3674520161715 28.13581104620545 31.9190695714876 22.577667366135447 41 18.051358292756042 30.073393584872026 29.57284467742066 22.302403444951267 42 17.757054777317766 27.71040777139524 32.321331637324086 22.21120581396291 43 20.06803616712713 27.50112414625649 32.03862404498206 20.392215641634326 44 19.59660366046327 29.096956095505845 30.19715094752364 21.109289296507246 45 19.45051528433811 28.38656655350936 30.61561692336361 21.54730123878892 46 19.94539282328826 27.987798455767376 30.111624685036496 21.955184035907866 47 19.285741774490184 26.104347103956183 31.024765650951576 23.585145470602058 48 19.119449148079433 26.10763852317564 31.05261612127006 23.720296207474863 49 18.83638709520607 26.063837328947475 32.92457282442253 22.17520275142392 50 18.19218039813007 24.994683092030108 34.487693130352355 22.32544337948747 51 17.12763414811994 25.006177740688827 34.703508956711254 23.162679154479974 52 16.29637356494122 26.21777447398057 33.67658616024047 23.809265800837743 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 1600.0 1 1999.0 2 2398.0 3 40635.5 4 78873.0 5 48237.0 6 17601.0 7 17941.0 8 18281.0 9 19669.5 10 21058.0 11 22214.0 12 23370.0 13 23293.5 14 22275.5 15 21334.0 16 19853.0 17 18372.0 18 17402.0 19 16432.0 20 15840.5 21 15249.0 22 14961.5 23 14674.0 24 14845.5 25 15017.0 26 16229.0 27 17441.0 28 19449.5 29 21458.0 30 23556.0 31 25654.0 32 31611.5 33 37569.0 34 45550.5 35 53532.0 36 62961.5 37 72391.0 38 77231.5 39 80718.0 40 79364.0 41 82246.0 42 85128.0 43 92797.5 44 100467.0 45 119756.0 46 139045.0 47 154097.0 48 169149.0 49 171894.5 50 174640.0 51 163101.0 52 151562.0 53 131760.5 54 111959.0 55 98277.5 56 84596.0 57 76315.0 58 68034.0 59 62558.0 60 57082.0 61 52247.5 62 47413.0 63 42618.5 64 31524.0 65 25224.0 66 20638.5 67 16053.0 68 13136.0 69 10219.0 70 8452.5 71 6686.0 72 6121.5 73 5557.0 74 4452.0 75 3347.0 76 2590.0 77 1833.0 78 1454.5 79 1076.0 80 828.5 81 581.0 82 394.0 83 207.0 84 162.5 85 118.0 86 77.5 87 37.0 88 27.0 89 12.5 90 8.0 91 8.0 92 8.0 93 5.0 94 2.0 95 1.5 96 1.0 97 1.5 98 2.0 99 1.0 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 1974832.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 39.86580756733821 #Duplication Level Percentage of deduplicated Percentage of total 1 70.91475159344822 28.270738407099977 2 10.511877891920479 8.381290024213172 3 4.945284766176364 5.914433125622281 4 3.151125022906375 5.02488575135239 5 2.149015197719785 4.283611316579111 6 1.6152955829382758 3.8637037724273218 7 1.284171774671588 3.583618139672531 8 0.9988806841984977 3.185694811119075 9 0.7972321978491235 2.8604074847345333 >10 3.449701674400489 21.400972775841755 >50 0.1298155825574647 3.5257757184239193 >100 0.04798635195967192 3.0713541683373498 >500 0.002047022843688301 0.5410492304611663 >1k 0.0021749617714188203 1.7551457502478933 >5k 5.117557109220752E-4 1.3509399478907342 >10k+ 1.279389277305188E-4 2.9863795759768292 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 58552 2.964910432887456 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTC 8207 0.4155796543705997 Illumina PCR Primer Index 2 (95% over 21bp) CGTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTT 7155 0.36230930023414654 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCT 5965 0.302051009908691 Illumina PCR Primer Index 2 (95% over 22bp) CGCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGC 5160 0.2612880488061769 Illumina PCR Primer Index 2 (95% over 24bp) CGTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCT 3237 0.1639126771289912 No Hit CGTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTG 2968 0.15029126528231262 Illumina PCR Primer Index 2 (95% over 23bp) GAATCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCT 2750 0.13925235159243926 Illumina PCR Primer Index 2 (95% over 22bp) CCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGCT 2590 0.13115039659069735 Illumina PCR Primer Index 2 (96% over 25bp) CGTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTC 2518 0.12750451683991348 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCG 2483 0.12573221418328243 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 2451 0.12411182318293405 No Hit CTGTCTCTTATACACATCTGACGCCCTGTAACTCGTATGCCGTCTTCTGCTT 2415 0.1222888833075421 Illumina PCR Primer Index 2 (96% over 26bp) >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.1273526051836308 0.0 2 0.0 0.0 0.0 0.35233376813825174 0.0 3 0.0 0.0 0.0 0.8023467312662546 0.0 4 0.0 0.0 0.0 1.1837969001920163 0.0 5 0.0 0.0 0.0 2.8417100796422177 0.0 6 0.0 0.0 0.0 4.132908520826075 0.0 7 0.0 0.0 0.0 6.204578414771484 0.0 8 0.0 0.0 0.0 8.162365203723658 0.0 9 0.0 0.0 0.0 10.372831714292658 0.0 10 0.0 0.0 0.0 11.466899462840383 0.0 11 0.0 0.0 0.0 12.318364296304699 0.0 12 0.0 0.0 0.0 12.962824179474508 0.0 13 5.0637218760887E-5 0.0 0.0 13.331007397084917 0.0 14 5.0637218760887E-5 0.0 0.0 13.570065706855065 0.0 15 5.0637218760887E-5 0.0 0.0 13.855457071791424 0.0 16 5.0637218760887E-5 0.0 0.0 14.156343425668615 0.0 17 5.0637218760887E-5 0.0 0.0 14.544680256345856 5.0637218760887E-5 18 5.0637218760887E-5 0.0 0.0 14.761610101517496 5.0637218760887E-5 19 5.0637218760887E-5 0.0 0.0 15.01864462394776 5.0637218760887E-5 20 5.0637218760887E-5 0.0 0.0 15.257702933717907 5.0637218760887E-5 21 5.0637218760887E-5 0.0 0.0 15.530738817276609 5.0637218760887E-5 22 5.0637218760887E-5 0.0 0.0 15.866210391567485 5.0637218760887E-5 23 5.0637218760887E-5 0.0 0.0 16.112712372495483 5.0637218760887E-5 24 5.0637218760887E-5 0.0 0.0 16.32037560663388 5.0637218760887E-5 25 5.0637218760887E-5 0.0 0.0 16.523734677177604 5.0637218760887E-5 26 5.0637218760887E-5 0.0 0.0 16.73879094525509 5.0637218760887E-5 27 5.0637218760887E-5 0.0 0.0 16.976785873431258 5.0637218760887E-5 28 5.0637218760887E-5 0.0 0.0 17.215692271545123 5.0637218760887E-5 29 1.01274437521774E-4 0.0 0.0 17.496678198449285 5.0637218760887E-5 30 1.01274437521774E-4 0.0 0.0 17.731179158530953 5.0637218760887E-5 31 1.01274437521774E-4 0.0 0.0 17.98907451368015 5.0637218760887E-5 32 1.5191165628266102E-4 0.0 0.0 18.25218550236172 5.0637218760887E-5 33 1.5191165628266102E-4 0.0 0.0 18.51600541210594 5.0637218760887E-5 34 1.5191165628266102E-4 0.0 0.0 18.815322012201545 5.0637218760887E-5 35 1.5191165628266102E-4 0.0 0.0 19.074128837288438 5.0637218760887E-5 36 1.5191165628266102E-4 0.0 0.0 19.321744837029176 5.0637218760887E-5 37 1.5191165628266102E-4 0.0 0.0 19.608807230184645 5.0637218760887E-5 38 1.5191165628266102E-4 0.0 0.0 19.908478290811573 5.0637218760887E-5 39 1.5191165628266102E-4 0.0 0.0 20.187641277840342 5.0637218760887E-5 40 1.5191165628266102E-4 0.0 0.0 20.45586662561676 5.0637218760887E-5 >>END_MODULE >>Kmer Content fail #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position CGTTTTT 23340 0.0 44.472576 1 CGTTCTG 700 0.0 42.057144 1 GCGCGAC 330 0.0 41.81818 8 ATTGCGG 375 0.0 41.706665 1 ATAGCGG 265 0.0 41.660378 1 CCCGCAC 1045 0.0 41.598083 32 CCGCACT 1035 0.0 41.555557 33 CTAGCGG 375 0.0 41.09333 1 CGCACTT 1050 0.0 40.961903 34 CAACGCA 1170 0.0 40.692307 16 TCAACGC 1165 0.0 40.669533 15 CATGCGG 215 0.0 40.651165 1 TATGCGG 375 0.0 40.48 1 ACCCGCA 1085 0.0 40.064514 31 CGACGGT 230 0.0 40.0 27 CGTTTTC 955 0.0 39.979057 1 ATGACGG 190 0.0 39.94737 1 TACGGGA 710 0.0 39.84507 3 CGTTTCT 855 0.0 39.54386 1 ACGCAAG 1205 0.0 39.510372 18 >>END_MODULE