##FastQC 0.11.5 >>Basic Statistics pass #Measure Value Filename SRR2933065.fastq File type Conventional base calls Encoding Sanger / Illumina 1.9 Total Sequences 2689137 Sequences flagged as poor quality 0 Sequence length 52 %GC 47 >>END_MODULE >>Per base sequence quality pass #Base Mean Median Lower Quartile Upper Quartile 10th Percentile 90th Percentile 1 32.402356220601625 33.0 31.0 34.0 31.0 34.0 2 32.74450688083203 34.0 31.0 34.0 31.0 34.0 3 32.809333998230656 34.0 31.0 34.0 31.0 34.0 4 36.275648284189316 37.0 37.0 37.0 35.0 37.0 5 36.24564423456298 37.0 37.0 37.0 35.0 37.0 6 36.38052951560296 37.0 37.0 37.0 35.0 37.0 7 36.43310400325458 37.0 37.0 37.0 35.0 37.0 8 36.24664864601543 37.0 37.0 37.0 35.0 37.0 9 37.93007533643693 39.0 38.0 39.0 35.0 39.0 10 37.84691371246612 39.0 38.0 39.0 35.0 39.0 11 37.51572158651642 39.0 37.0 39.0 35.0 39.0 12 37.38311435973697 39.0 37.0 39.0 35.0 39.0 13 37.16614066148359 39.0 37.0 39.0 33.0 39.0 14 38.69038803155064 41.0 38.0 41.0 34.0 41.0 15 38.77431830360447 41.0 38.0 41.0 35.0 41.0 16 38.816222453523196 41.0 38.0 41.0 35.0 41.0 17 38.769239350765694 41.0 38.0 41.0 35.0 41.0 18 38.665633621492695 40.0 38.0 41.0 35.0 41.0 19 38.51971915153449 40.0 37.0 41.0 34.0 41.0 20 38.32496373371829 40.0 36.0 41.0 34.0 41.0 21 38.35872475072858 40.0 36.0 41.0 34.0 41.0 22 38.30700815912317 40.0 35.0 41.0 34.0 41.0 23 38.20201313655645 40.0 35.0 41.0 34.0 41.0 24 38.1399489873517 40.0 35.0 41.0 34.0 41.0 25 38.113145964671936 40.0 35.0 41.0 34.0 41.0 26 38.01207487755365 40.0 35.0 41.0 34.0 41.0 27 37.904715155828804 40.0 35.0 41.0 34.0 41.0 28 37.90090501153344 40.0 35.0 41.0 34.0 41.0 29 37.86842172786288 40.0 35.0 41.0 34.0 41.0 30 37.79264091044822 40.0 35.0 41.0 34.0 41.0 31 37.74700061767028 40.0 35.0 41.0 34.0 41.0 32 37.573425600852616 40.0 35.0 41.0 33.0 41.0 33 37.33635660808653 40.0 35.0 41.0 33.0 41.0 34 37.19779654216204 40.0 35.0 41.0 33.0 41.0 35 37.020911913375926 40.0 35.0 41.0 32.0 41.0 36 36.88519142014706 40.0 35.0 41.0 32.0 41.0 37 36.77978251015102 40.0 35.0 41.0 32.0 41.0 38 36.72294457292433 39.0 35.0 41.0 32.0 41.0 39 36.597482389331596 39.0 35.0 41.0 31.0 41.0 40 36.524421031728764 39.0 35.0 41.0 31.0 41.0 41 36.46404590022747 39.0 35.0 41.0 31.0 41.0 42 36.41162127478072 39.0 35.0 41.0 31.0 41.0 43 36.30576426563615 39.0 35.0 41.0 31.0 41.0 44 36.265133014792475 39.0 35.0 41.0 31.0 41.0 45 36.225495019405855 38.0 35.0 41.0 31.0 41.0 46 36.14614502719646 38.0 35.0 41.0 31.0 41.0 47 35.983434834298144 38.0 35.0 41.0 31.0 41.0 48 35.93990711518231 38.0 35.0 41.0 31.0 41.0 49 35.90096190710997 38.0 35.0 41.0 31.0 41.0 50 35.781618415127234 37.0 35.0 41.0 30.0 41.0 51 35.71912847876475 37.0 35.0 40.0 30.0 41.0 52 35.42802430668278 37.0 35.0 40.0 29.0 41.0 >>END_MODULE >>Per sequence quality scores pass #Quality Count 9 2.0 10 2.0 11 3.0 12 6.0 13 11.0 14 27.0 15 31.0 16 89.0 17 202.0 18 493.0 19 1042.0 20 2009.0 21 3890.0 22 6622.0 23 10007.0 24 13956.0 25 20682.0 26 28170.0 27 30169.0 28 29990.0 29 31350.0 30 35050.0 31 42365.0 32 53558.0 33 72526.0 34 162802.0 35 250171.0 36 193496.0 37 234547.0 38 367807.0 39 1083275.0 40 14787.0 >>END_MODULE >>Per base sequence content fail #Base G A T C 1 36.712967766238755 19.1760404918009 23.013405415938273 21.097586326022068 2 28.315031922880834 25.237576218690233 23.75397757719298 22.69341428123595 3 25.50186174969888 25.544849518637392 28.862456617122888 20.090832114540834 4 21.6895234419072 25.389818369238903 28.36322582300567 24.557432365848225 5 22.87436452661207 36.33831225408002 22.887491414531873 17.89983180477603 6 80.1180824926361 6.770276114604797 10.638022532879507 2.4736188598795823 7 82.34809159964702 2.0393531456374294 10.477339012478724 5.1352162422368215 8 74.54372908483279 6.298265949261789 14.163503012304691 4.994501953600727 9 36.51807252661355 28.501522979305253 18.256526164341942 16.723878329739243 10 33.352447272117416 19.946956960541616 27.61179515956234 19.08880060777863 11 29.0953938010596 18.92867488714781 31.67659364323945 20.299337668553147 12 23.539336225711075 20.862380756354177 33.3186074194063 22.27967559852845 13 19.507336368507815 25.617103182173313 34.452354045182524 20.423206404136344 14 16.834359870843326 26.138497220483746 35.24491314499782 21.78222976367511 15 19.948072560081542 18.891004809349617 39.609845091566555 21.55107753900229 16 22.077566148545053 21.870771180493964 29.373252459804018 26.67841021115696 17 21.238374987960825 26.154115614042723 29.762894192449103 22.844615205547356 18 22.145022734059292 31.381703498185477 26.979622086937184 19.493651680818047 19 21.177611999686142 26.987059417203362 27.22330621310852 24.612022370001974 20 22.92185188036162 26.227745183677886 31.90220505686397 18.94819787909653 21 18.904726683690715 25.812928088081787 30.08076568802556 25.20157954020193 22 19.051874263007054 27.37975045525758 29.122242563320498 24.446132718414866 23 18.087252527483724 31.364002652151974 30.610452349582783 19.93829247078152 24 24.678660849186933 26.46049643435794 26.625344859707777 22.23549785674735 25 18.0419591861627 28.523946530057785 25.70289278679368 27.731201496985836 26 16.404110314944905 24.056788478980433 33.74238649797314 25.79671470810152 27 20.318600353942546 23.2632253395792 32.2758937160881 24.14228059039015 28 18.738688285498284 28.872273893074247 27.675904946456797 24.71313287497067 29 20.12601068669986 24.31081049422175 30.385696228938876 25.177482590139512 30 23.14262902931312 26.17460545892604 26.455104369914956 24.22766114184588 31 23.795403506775596 24.893934373741462 26.670601014377475 24.640061105105467 32 22.421691419961125 26.943662595100214 23.65480077809349 26.97984520684517 33 17.89183667473989 24.04544655032451 29.915359462905755 28.147357312029847 34 18.727383543493694 25.774253970697664 27.482980599352135 28.01538188645651 35 27.527753327554528 25.90013078545273 25.052684188273037 21.5194316987197 36 18.525125346904975 27.350819240522146 28.582403945949945 25.541651466622934 37 21.579785633829736 27.511093707758288 27.344980936263198 23.564139722148777 38 19.588663574968475 24.177533535851836 27.130711451294598 29.10309143788509 39 23.49132825884289 23.181526266605236 30.805645082418636 22.52150039213324 40 19.45222575123543 21.26012917898939 33.64633337758545 25.64131169218972 41 18.810495709218237 27.194821238189054 27.99533828138916 25.999344771203546 42 19.916910146266257 21.87475015218637 30.724355062609305 27.483984638938068 43 22.271829215097632 24.052809507288025 31.133371040597783 22.54199023701656 44 21.13986754858529 24.923237454990208 27.37714738966442 26.559747606760087 45 22.038445791344955 23.30230851012797 28.926380470760694 25.732865227766382 46 24.40039313727787 24.39615385902615 28.45864677032074 22.744806233375243 47 19.36115564212608 26.78178910185684 30.635888019093116 23.221167236923964 48 19.969789564458786 24.918514750271186 28.35898654475395 26.752709140516085 49 19.18262252908647 23.40449742798526 32.098550575891075 25.314329467037194 50 18.708269604709614 23.853005629687146 32.70469299258461 24.734031773018632 51 18.879811627299016 23.01876029372992 29.59012501036578 28.511303068605283 52 18.837902271249103 22.311990798534996 32.47960219207872 26.37050473813718 >>END_MODULE >>Per sequence GC content fail #GC Content Count 0 2639.0 1 3366.0 2 4093.0 3 30250.5 4 56408.0 5 33101.0 6 9794.0 7 10603.0 8 11412.0 9 13607.5 10 15803.0 11 18127.5 12 20452.0 13 20980.0 14 19668.5 15 17829.0 16 15772.5 17 13716.0 18 12605.0 19 11494.0 20 10806.5 21 10119.0 22 9809.0 23 9499.0 24 10003.0 25 10507.0 26 12381.0 27 14255.0 28 15767.5 29 17280.0 30 26506.5 31 35733.0 32 32547.0 33 29361.0 34 34008.5 35 38656.0 36 44016.0 37 49376.0 38 55639.5 39 66711.5 40 71520.0 41 79053.5 42 86587.0 43 104845.5 44 123104.0 45 166325.5 46 209547.0 47 229818.0 48 250089.0 49 272733.0 50 295377.0 51 267787.0 52 240197.0 53 206281.0 54 172365.0 55 161538.0 56 150711.0 57 140933.0 58 131155.0 59 124297.5 60 117440.0 61 107554.0 62 97668.0 63 94085.0 64 79211.5 65 67921.0 66 58212.5 67 48504.0 68 39000.0 69 29496.0 70 23797.0 71 18098.0 72 15400.0 73 12702.0 74 9809.0 75 6916.0 76 5497.0 77 4078.0 78 2845.0 79 1612.0 80 1309.5 81 1007.0 82 696.0 83 385.0 84 292.5 85 200.0 86 132.5 87 65.0 88 52.5 89 22.5 90 5.0 91 4.0 92 3.0 93 3.0 94 3.0 95 2.5 96 2.0 97 1.5 98 1.0 99 0.5 100 0.0 >>END_MODULE >>Per base N content pass #Base N-Count 1 0.0 2 0.0 3 0.0 4 0.0 5 0.0 6 0.0 7 0.0 8 0.0 9 0.0 10 0.0 11 0.0 12 0.0 13 0.0 14 0.0 15 0.0 16 0.0 17 0.0 18 0.0 19 0.0 20 0.0 21 0.0 22 0.0 23 0.0 24 0.0 25 0.0 26 0.0 27 0.0 28 0.0 29 0.0 30 0.0 31 0.0 32 0.0 33 0.0 34 0.0 35 0.0 36 0.0 37 0.0 38 0.0 39 0.0 40 0.0 41 0.0 42 0.0 43 0.0 44 0.0 45 0.0 46 0.0 47 0.0 48 0.0 49 0.0 50 0.0 51 0.0 52 0.0 >>END_MODULE >>Sequence Length Distribution pass #Length Count 52 2689137.0 >>END_MODULE >>Sequence Duplication Levels fail #Total Deduplicated Percentage 22.2496125205078 #Duplication Level Percentage of deduplicated Percentage of total 1 71.91493038112972 16.000793354194307 2 11.277227043803999 5.018278640608612 3 4.528958021064504 3.0230268327099306 4 2.330692321121878 2.0742800419793888 5 1.4109151392167285 1.5696157573445262 6 0.9189353985295396 1.2267573929196405 7 0.6283679325854045 0.9786660114236472 8 0.47371389569792555 0.8431960499887272 9 0.40803158683117735 0.8170690232809465 >10 4.3188908512794635 22.778713450194456 >50 1.3721011870925968 21.541552140606214 >100 0.39936727598452687 12.597851915043798 >500 0.008260182240245276 1.301728950135756 >1k 0.007585881649204845 3.8478006551180473 >5k 6.743005910404306E-4 0.9181416173103548 >10k+ 0.0013486011820808613 5.462528167141745 >>END_MODULE >>Overrepresented sequences fail #Sequence Count Percentage Possible Source CGTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT 45927 1.7078713356738613 No Hit GGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 18777 0.6982537520401526 No Hit GAATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT 16293 0.6058821101342178 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACAAAATAAAAT 14745 0.5483171738739975 No Hit GTGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13706 0.5096802431412011 No Hit GAGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 13158 0.4893019582118724 No Hit GAATGATACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGT 12233 0.4549043057307976 No Hit GAATGATACGGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCC 10800 0.40161583437362985 No Hit GCTCAACTTGACCCTGCATTAGAAATTGAAGACTGTAAATACCTGTCTCTTA 7626 0.2835854030493798 No Hit TGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5746 0.21367449854730347 No Hit AGGCAGGGACTTAATCAACGCAAGCTTATGACCCGCACTTACTGGGAATTCC 5658 0.210402073230185 No Hit GCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT 5449 0.20263006310202863 Illumina Single End Adapter 1 (95% over 21bp) CTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCTT 4866 0.1809502453761188 Illumina Single End Adapter 1 (95% over 22bp) GAATGATACGGCGACCACCTGTCTCTTATACACATCTGACGCCCTATCGTTC 4797 0.1783843664342873 No Hit CCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGCT 4445 0.1652946651658134 Illumina Single End Adapter 1 (95% over 21bp) GAACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTG 4071 0.15138685756805995 No Hit GCTCAACTTGACCCCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTAT 3941 0.14655259289504402 No Hit GCTCAACTTGACCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGC 3777 0.14045398207677778 No Hit GAATGATCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCT 3622 0.13469005112048957 No Hit CGCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCTGC 3576 0.13297946515926856 No Hit GCTCAACTTGACCCTGCATTAGAACTGTCTCTTATACACATCTGACGCCCTA 3308 0.12301344260258962 No Hit GAATGACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTT 3189 0.1185882310942135 No Hit GAATGATACGGCGACTGTCTCTTATACACATCTGACGCCCTATCGTTCGTAT 3096 0.11512987252044057 No Hit CGTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTC 3053 0.11353084651321223 No Hit CGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA 3002 0.11163432729533675 No Hit CGTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCGTCTTCT 2933 0.10906844835350522 No Hit CGTTTTTTTTCTGTCTCTTATACACATCTGACGCCCTATCGTTCGTATGCCG 2782 0.10345326400254058 No Hit >>END_MODULE >>Adapter Content fail #Position Illumina Universal Adapter Illumina Small RNA 3' Adapter Illumina Small RNA 5' Adapter Nextera Transposase Sequence SOLID Small RNA Adapter 1 0.0 0.0 0.0 0.18693729624039238 0.0 2 0.0 0.0 0.0 0.6500226652639862 0.0 3 0.0 0.0 0.0 1.2221764826410852 0.0 4 0.0 0.0 0.0 1.8116964661897106 0.0 5 0.0 0.0 0.0 4.571094741547196 0.0 6 0.0 0.0 0.0 5.361906068749938 0.0 7 0.0 0.0 0.0 6.92512133074663 0.0 8 0.0 0.0 0.0 8.86566954379788 0.0 9 0.0 0.0 0.0 10.314610226254743 0.0 10 0.0 0.0 0.0 11.878494847975391 0.0 11 0.0 0.0 0.0 12.892612016420138 0.0 12 0.0 0.0 0.0 14.039076476951527 0.0 13 0.0 0.0 0.0 14.571105897542594 0.0 14 0.0 0.0 0.0 14.801291269280814 0.0 15 0.0 0.0 0.0 15.564398541242042 0.0 16 0.0 0.0 0.0 16.300657050942366 0.0 17 0.0 0.0 0.0 17.093104590803666 0.0 18 0.0 0.0 0.0 17.49650538444118 0.0 19 3.718665133089166E-5 0.0 0.0 18.119865220700916 0.0 20 3.718665133089166E-5 3.718665133089166E-5 0.0 18.69350650413125 0.0 21 3.718665133089166E-5 3.718665133089166E-5 0.0 19.241117131629963 0.0 22 3.718665133089166E-5 3.718665133089166E-5 0.0 19.838855365122715 0.0 23 3.718665133089166E-5 3.718665133089166E-5 0.0 20.291082231957688 0.0 24 3.718665133089166E-5 3.718665133089166E-5 0.0 20.62784454641024 0.0 25 7.437330266178332E-5 3.718665133089166E-5 0.0 21.08025734650187 0.0 26 7.437330266178332E-5 3.718665133089166E-5 0.0 21.474510223911984 0.0 27 1.1155995399267497E-4 3.718665133089166E-5 0.0 21.8839352550651 0.0 28 1.1155995399267497E-4 3.718665133089166E-5 0.0 22.297078951351306 0.0 29 1.1155995399267497E-4 3.718665133089166E-5 0.0 22.689769989405523 0.0 30 1.1155995399267497E-4 3.718665133089166E-5 0.0 23.053046386257005 0.0 31 1.1155995399267497E-4 3.718665133089166E-5 0.0 23.36526551083117 0.0 32 1.4874660532356664E-4 3.718665133089166E-5 0.0 23.788300856371393 0.0 33 1.859332566544583E-4 3.718665133089166E-5 0.0 24.16972433907235 0.0 34 1.859332566544583E-4 3.718665133089166E-5 0.0 24.73607703884183 0.0 35 1.859332566544583E-4 3.718665133089166E-5 0.0 25.07607459196017 0.0 36 1.859332566544583E-4 3.718665133089166E-5 0.0 25.462890139104108 0.0 37 2.2311990798534994E-4 3.718665133089166E-5 0.0 25.96260435968863 0.0 38 2.603065593162416E-4 3.718665133089166E-5 0.0 26.98282013895164 0.0 39 2.603065593162416E-4 3.718665133089166E-5 0.0 27.46643253950989 0.0 40 2.603065593162416E-4 3.718665133089166E-5 0.0 27.884670807028424 0.0 >>END_MODULE >>Kmer Content warn #Sequence Count PValue Obs/Exp Max Max Obs/Exp Position TCGATTG 20 6.3129707E-4 46.0 36 CGTTTAG 20 6.3129707E-4 46.0 24 CGTTTTT 12950 0.0 44.454826 1 ACTTGAC 4820 0.0 44.18672 6 TGCATTA 3690 0.0 43.756092 15 TCAACTT 4870 0.0 43.733063 3 CGGTCTA 815 0.0 43.46012 30 TACGGGT 270 0.0 43.444447 3 GCATTAG 3755 0.0 43.366177 16 CTTGACC 4925 0.0 43.24467 7 CTCAACT 4990 0.0 43.23447 2 CGACGGT 815 0.0 43.177914 27 AACTTGA 4950 0.0 42.9798 5 CATTAGA 3705 0.0 42.958164 17 TACGGGA 1045 0.0 42.91866 3 CCTGCAT 3950 0.0 42.56456 13 CTTGCGG 590 0.0 42.491524 1 GCTCAAC 5360 0.0 42.43843 1 ATTAGAA 3740 0.0 42.43316 18 CCCTGCA 4040 0.0 41.84406 12 >>END_MODULE